KEGG   Salvelinus namaycush (lake trout): 120057413
Entry
120057413         CDS       T07522                                 
Name
(RefSeq) lissencephaly-1 homolog B
  KO
K16794  platelet-activating factor acetylhydrolase IB subunit alpha
Organism
snh  Salvelinus namaycush (lake trout)
Pathway
snh00565  Ether lipid metabolism
snh01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:snh00001]
 09100 Metabolism
  09103 Lipid metabolism
   00565 Ether lipid metabolism
    120057413
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:snh03036]
    120057413
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:snh04147]
    120057413
Chromosome and associated proteins [BR:snh03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    120057413
Exosome [BR:snh04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   120057413
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st EIF3I WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_WDR90_POC16_2nd Beta-prop_SCAP Beta-prop_IFT122_1st ANAPC4_WD40 NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_EML WDR90_beta-prop_4th Beta-prop_Vps41 Beta-prop_DCAF4 Beta-prop_Nup120_160 LisH Beta-prop_SPT8 LisH_PAC1 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_RIG_2nd Beta-prop_WDR35_TULP_N Beta-prop_NUP159_NUP214 Beta-prop_WDR11_2nd Nucleoporin_N Pox_A_type_inc ARMC9_LisH KH_GLD-3_2nd DUF2570 SutA-RBD LisH_2 LisH_WDR26
Other DBs
NCBI-GeneID: 120057413
NCBI-ProteinID: XP_038861961
UniProt: A0A8U1BTQ6
LinkDB
Position
Sna12:complement(52471398..52520642)
AA seq 410 aa
MVLSQRQRDELNRAIADYLRSNGYEEAYSTFKKEAELDMNEELDKKYAGLLEKKWTSVIR
LQKKVMELESKLNEAKEEITLGGPVAQKRDPKEWIPRPPERYALSGHRSPVTRVIFHPVF
SVMVTSSEDATIKVWDYEAGDFERTLKGHTDSVQDISFDQTGKLLASCSADMTIKLWDFQ
GFECIRTMHGHDHNVSSVAIMPNGDHIVSGSRDKTIKMWEVATGYCVKTFTGHREWVRMV
RPNQDGSLIASCSNDQTVRVWVATSKECKAELREHEHVVECIAWAPDTAHPTILEATSSE
SKKNGKSGPFLLSGSRDKTIKMWDISTGMCLMTLVGHDNWVRGVLVHPGGKFIVSCADDK
TLRIWDYKNKRCMKTLCAHEHFVTSLDMHRTAPYVVTGSVDQTVKVWECR
NT seq 1233 nt   +upstreamnt  +downstreamnt
atggtgctgtcacagagacaaagagacgaactaaaccgagcaatagcagactacctacgc
tccaatggctatgaggaagcctactccaccttcaagaaagaggctgaattagatatgaat
gaggagttagataagaagtacgctggtcttttggaaaagaaatggacctctgtcatcaga
ttacagaagaaggtgatggagctggagtcgaagctaaatgaggccaaagaggagatcact
ctagggggtccggtggcccagaagagggaccctaaggagtggatcccccgtcctccagag
agatacgccctgagcggccaccgctcccccgtcacacgggtcatcttccatcctgtcttc
tccgtcatggtcacctcctccgaggacgccaccatcaaggtgtgggactatgaggcaggg
gactttgagcggacactgaagggccatacagactctgtccaggacatctcctttgaccag
acgggcaagctgctggcttcctgttctgcagacatgaccatcaagctgtgggacttccag
ggcttcgagtgcatccgcaccatgcacggtcatgaccataacgtgtcgtctgtagccatc
atgcccaacggagaccacatagtctccggctccagagacaagaccatcaaaatgtgggag
gtggccactgggtactgtgtgaagacatttacaggccacagggagtgggtgaggatggtc
cggcccaaccaggatggttctcttatcgccagctgttccaacgaccagacggtgcgtgtg
tgggtggccacctccaaggagtgtaaggctgagctgcgggagcacgaacatgtggtggag
tgtatcgcctgggcccccgatactgctcaccctaccatcctggaggctaccagctcggag
agtaagaagaatgggaagtctggtccgttccttctctctggctctagagataagaccatc
aagatgtgggacattagcactggcatgtgccttatgactctggtgggtcatgataactgg
gtgcgtggtgtgttggtgcaccctggaggcaagttcatagtgagctgtgctgatgataag
actctgaggatctgggactacaagaacaagcgctgcatgaagaccctttgtgcccatgaa
cactttgttacctctctggatatgcaccggactgccccatacgtggtaacaggcagcgtt
gatcagacagtcaaagtgtgggagtgtcgctga

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