Salvelinus namaycush (lake trout): 120057420
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Entry
120057420 CDS
T07522
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120057420 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120057420 (pcf11)
03019 Messenger RNA biogenesis [BR:
snh03019
]
120057420 (pcf11)
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120057420 (pcf11)
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
120057420 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
120057420
NCBI-ProteinID:
XP_038861973
UniProt:
A0A8U1EPW6
LinkDB
All DBs
Position
Sna12:53248057..53276129
Genome browser
AA seq
1689 aa
AA seq
DB search
MDCLVINGYVSDKIGLVFDRSHIAKMDDAAREDACREYQSSLEDLTFNSKPHINMLTILA
EENLHFAKDIVAIIEAQITKAPAAEKLPVLYLVDSIVKNVGGEYLAVFAKNLVTSFICVF
EKVDENTRKSLFKLRSTWDEIFPLKKLYALDVRVNSHDPAWPIKALPPTVNASIHVNPKF
LKHPEEVTSPRALSPAPLVRAPAPAPQPAVVPSVSEKSITQEQVIRQQLLAKQKQLLELQ
QKKIELELEQTKAQLAANVVLSTPAIVPKATLPPSVIKPCIPPVSDPKPPTRDPRLNRVG
PGALQAKESTSHKKEGHGMGGPAHTPEKQLPERPGRPERTRPPKKELLEVKTKSKSLSPM
AKGVLGKSKHYEAENVKTTADTAGKKDPRLRKHLHDKAEPKEEVKEKKKCTDKEKELDEA
VMKASGRGKMANGTVSKPEREKPEPVEKPENQIRGNARTNARKRSRSPSLHLHSPKRKTE
RRSPKRRARSISPSPPLHKPGKGGRQSGGKHSSHHEDFPQHGTTREERVTPKKSSSEPRR
TKRPAEERPVEARDTHSSPRTTSEGKETKENAKRWRSGWEENKHLKLSSEEAHGKAAGPP
QRRPSYSSSKRPTTPKQHRLSVDANLQIPEVLHSASKRDLLKKASKRLENGEISHDDFLN
VAHQIKQLFQYQEEKQRGGDSWEGSSEDGHGHAHPHHLPPTRKKPLLATPTGGVSSGADL
SDAELTYYEHKSKLRRTQVLWQQEQGGKGWDGEDSQEEGEGVLGRPGEGPGGAKTEVNRE
TNALPSGMKFTRLPKDRLKEVEEEQPTPAAIIQEYSHGNEFPRLKSLPGLRFRRIQDPRE
STATDRLKAGERERNSPLSERLPNHRPPYDEREEPKSGYNAPPRRYGGGPLSEDHSVKPT
YPRYDDPRKHDRIPPKPPSGPVLQNSVSLALDGPIRKSPVPLPVPAYERERLSPLQQMDA
AEMSPVPRFESPNSEHSCEEGPLDTPPLPRTHHPGGPPRGPALSSVRSKHSESPGHTPPH
TADGPQRYDSGPKGGPPSPRYDGPHKGTQSGYDGPGHIGQPGRPHPGGRYEGVQGPGRYD
GPGCSSHGPSRYDGPYPQGPGRFDGPPLHKGPEKFDGPGRYDGPSMPHVPMRGDPQGIGG
RFDGGPPPPQQGRPSGRYDGRFDGQGPGPMRFDGPMQSNRFDGPMNFNNSHMQPGPGRFE
GLMRFQQGPMRFDGAPNQPGPMCFDGPVNPSTPMGQPGPMRYDPLPSLPPQGMPPRFDCP
SGQQVSPRYHATPNLQPPLRPLGTPMYDPVNPGGPQQFQTFPVQQNVVGQQGANFTVSPV
PVSQAGFNNSYVRPPFYTPGVPLPPAGNMQQPMNMLSNLGQPFIPPSTVPFNQPAPQFPL
PESHFGQVDVNDLLSKLISTGIISTGGIKPAQSTDTAAAPSGTESAATQPTPPMVEEEEE
EEQEEDENVPDLTGFVIEDMKQRYDSVVTKLYTGIQCYSCGMRFTASQTDVYADHLDWHY
RLNRSEKDISKKVTHRRWYYSLTDWIEFEEIADLEERAKSLFFEKVNEEVVQKTQEAAKE
KEFQSVKAAADVVDETCEICQEQFEMYWEEEEEEWHLRDAIRVDEKTYHPSCFEDYNNTS
SFLDVTPSPIKLMENPLGAFIKRENDEVTSCCAAVKQEVEASLSETGGEAQNVKDEVQVK
MEGETSAIS
NT seq
5070 nt
NT seq
+upstream
nt +downstream
nt
atggactgcctcgtaataaatggttatgtttctgataagattggtttagtatttgatcga
tcacacatcgcaaagatggacgacgcggcgagggaagatgcctgccgagagtatcagtcc
tccctcgaagatttgacattcaacagtaaacctcacatcaacatgctgaccattctggca
gaggagaatctgcacttcgccaaggatatcgtcgcaataattgaagcacaaatcaccaag
gctccagctgccgagaagcttccagttttgtacttagtggattccatagtgaagaatgtt
ggaggcgaataccttgcagtgtttgctaaaaacctagtcacttcatttatatgtgttttt
gaaaaggtggatgagaacactaggaaaagtctgttcaaattacgctccacctgggatgag
atcttcccgctgaagaaactctatgctctggacgtgcgagtcaactcgcacgacccggcc
tggcccatcaaagcactgccccctactgtgaacgccagcattcatgtcaaccctaaattt
ttaaaacatcctgaggaggtgacctcccctagggccctgtcccccgcacccctagtccgt
gccccagcccctgctccccagcctgcagtggtccccagcgtcagtgagaagagcatcacc
caggagcaggtgataaggcagcagctgctggccaagcagaaacagctactggagctacaa
cagaagaagattgagcttgagctggagcagaccaaagcacaactggctgctaacgtggtg
ctgtcaactccagcaatagtgccaaaggccaccctgcctccctctgtcatcaaaccctgt
atcccccctgtctctgaccccaaaccccccaccagggacccccgcctcaaccgggtcggc
ccaggggccctccaggccaaagaatcaaccagccataagaaagaaggccacggtatggga
ggaccagcacacacaccggagaaacagctgccagagcgacccggtaggcccgagaggaca
cggccccccaagaaagaacttctagaagtgaaaaccaagtccaagtccctctctcccatg
gctaaaggggtgcttgggaagagcaagcactatgaggctgagaacgtgaagacgacagcc
gacaccgcgggcaagaaagaccccaggctgaggaaacatctccatgacaaggccgaaccg
aaagaagaggtgaaagagaagaagaaatgcactgataaggagaaagagctggatgaggca
gtgatgaaggcatcaggcagggggaagatggccaacggcacagtcagcaaaccggagcgt
gagaaaccagagcctgtagagaaaccggagaaccagatcagagggaatgccaggaccaac
gccaggaaacgctcccgttccccctcgctgcacctgcactcacctaagaggaagactgag
aggaggtcccccaagaggagagccaggagcatctccccctctcctcctttacacaaacct
gggaaaggagggaggcagtcaggaggcaagcactcctctcaccatgaggacttcccccag
cacgggaccaccagagaggagagggtaacccccaagaagagctcgtctgagcccaggaga
accaagaggccggctgaggagaggccggttgaggccagggacactcattcctccccccgc
actacgtcagagggcaaggagaccaaggagaatgccaagcgctggaggagtggctgggaa
gagaacaaacatctgaagttgtcgtcagaggaggctcatgggaaggcggcaggtcctcca
cagagacggccgtcatactccagcagcaagagacctaccacccccaaacagcatcgcctt
agtgtcgatgctaacctgcagatcccagaggtgcttcactctgccagcaagagagacctg
ctcaaaaaggccagtaagcgtctggagaacggagagatcagccatgatgactttctgaac
gtggctcaccagatcaagcaactgttccagtaccaggaagagaagcagcgaggaggagac
tcctgggagggctccagtgaggatggccacggacacgcccacccacaccacctcccacca
accaggaagaagcccctgctggccacacccacagggggagtgtcctctggggcggacttg
tccgacgcggagcttacctactatgaacacaagtccaagctgaggaggacccaggtgctg
tggcagcaggagcaaggagggaagggctgggacggagaggacagccaggaggagggagag
ggggtgctggggaggcccggggagggccctgggggtgccaagactgaggttaacagggag
actaacgcccttccttcagggatgaagttcaccaggcttcctaaggacaggctgaaggag
gtagaggaggagcagcccaccccagcagccatcatccaggagtacagccacggcaacgag
ttccccaggctcaagtctctgccagggctacgcttcaggaggatacaagaccccagggag
tccaccgccaccgacagactcaaagctggtgaaagagagcgaaactctcccctcagtgag
cggctgcccaatcacagaccaccgtatgatgagagggaggagcctaagagcggctacaat
gcccctcccaggcggtacggaggaggtccgctgtctgaagaccactctgtcaaacctacg
tacccccgttacgacgaccctcgcaaacacgaccgcatcccccccaaaccccccagcggc
cccgtgctccagaactcagtcagcctggcactggacggccccattaggaagtccccggtt
cctttaccggtaccagcatacgagcgggagcgcctgtccccgttacagcagatggatgcg
gcagagatgagccctgtcccgcgctttgagagccccaatagcgagcactcgtgtgaagaa
gggcccctggacaccccccctctacccagaacccaccacccaggaggtcccccccgcggg
cctgcgctctcctcagtacgcagcaaacacagtgagtctccaggacacacccctcctcac
accgcagatgggccccagagatacgacagtggtcccaaaggaggaccaccttcgccacgc
tatgatggaccccacaagggcactcagtctgggtacgatgggcctggtcacataggtcag
cctggcaggcctcaccctgggggccgttacgagggcgtccaggggcccggtaggtacgat
ggaccagggtgctcctcacacggcccatcaaggtatgatgggccctaccctcagggcccc
ggcaggttcgatggccccccgctacataaaggaccagagaagtttgacggaccaggaaga
tacgacggcccctccatgcctcacgttccaatgagaggggacccacaaggcattggggga
aggtttgacggcggcccgccaccgccgcagcaaggtagaccatcggggcgatatgacggt
agatttgacggacaggggcctgggccaatgcgtttcgacggccccatgcagtccaaccgc
ttcgacggtccaatgaacttcaacaactcccacatgcagcccggccctggaaggttcgaa
ggactaatgcggttccagcaaggccccatgagattcgacggcgctcccaaccagccaggc
ccgatgtgtttcgatggcccagtgaacccctccaccccaatgggccagcctggccccatg
cgctatgaccccctgccctctctgcccccccagggcatgcccccacgctttgactgcccc
tccggccagcaggtgtctcccaggtaccacgccactcccaacctgcagcccccacttcgg
ccactagggacacccatgtacgacccagtcaaccccggaggcccccagcagttccagacg
ttcccagtgcaacagaacgtggtgggccaacagggggctaacttcacggtgtctcccgtc
cctgtgtcccaggctgggttcaacaactcctacgtcagacctccgttctacacccctggt
gtgcctctgccaccggcagggaacatgcagcagccgatgaacatgctttctaaccttggc
cagcccttcatccctcccagcacagtgcctttcaaccagcctgctccccagttccctctt
ccagagagtcactttgggcaggtagatgtaaacgacctgctgtccaagctcatttccacc
ggcatcatctctaccggaggcatcaaaccagctcagagtacagacactgctgcagcaccc
agtggtacagagtcagccgccacccaaccgacccctcccatggtagaagaggaggaagag
gaagagcaggaggaggatgagaatgtcccagacctcaccggcttcgtcattgaagacatg
aaacagcggtatgacagcgtggtgactaagctgtacacagggatccagtgttactcctgc
ggcatgcgtttcaccgcctctcagacagacgtctatgctgaccacctggactggcactac
cggctgaaccgttctgagaaagacatcagcaagaaggtcacccaccgccgctggtactac
agcctcacggactggatagagtttgaggagatagcggacctggaggagcgggccaagagc
ctgttctttgagaaggtgaatgaggaggtagtgcagaagacccaggaggccgccaaggag
aaagagttccagagtgttaaagcagctgcagatgtggtggatgagacgtgtgagatctgc
caggagcagtttgagatgtactgggaggaggaggaagaggagtggcacctgagagatgcc
atcagagtcgacgagaagacatatcatccttcatgttttgaagattataacaatacatct
tcgttcctggacgtcaccccgtcccccattaagctgatggagaacccgctgggtgcgttc
ataaaacgtgagaacgatgaggtcacttcttgctgtgctgcggtgaaacaggaagtggag
gcttcgttgtctgagacgggcggtgaggctcaaaatgtgaaggatgaagttcaggtgaaa
atggagggagaaacgagtgcaatttcctaa
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integrated database retrieval system
