Salvelinus namaycush (lake trout): 120057499
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Entry
120057499 CDS
T07522
Name
(RefSeq) nectin-3-like protein
KO
K06592
poliovirus receptor-related protein 3
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04514
Cell adhesion molecules
snh04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
120057499
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
120057499
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120057499
04090 CD molecules [BR:
snh04090
]
120057499
Cell adhesion molecules [BR:
snh04515
]
Immunoglobulin superfamily
Nectin family
120057499
CD molecules [BR:
snh04090
]
Proteins
120057499
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
V-set
Ig_3
ig
C2-set_2
Ig_2
I-set
Keratin_assoc
DUF6022
Motif
Other DBs
NCBI-GeneID:
120057499
NCBI-ProteinID:
XP_038862027
UniProt:
A0A8U1BY87
LinkDB
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Position
Sna12:34443210..34479990
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AA seq
844 aa
AA seq
DB search
MSPALSWPWHNLGISRPGSSITQQRHTPLSGTGGLVPPSPSRDILPCLVQEAWFLHHPAE
TYSPVWYRRPGSSITQQRHTPLSGTGGLVPPSPSRDILPCLVQEAWFLHHPAETYSPVWY
RRPGSSITQQRHTPLSGVGGSQVLVPQKVSAVLGKNVTLGCSVEVGANLSLTQSSWERRL
PTGSVTVAVYNPVFGISIPPNYVRRLSFRSPSSHDATIVLEDVGFEDIGVYTCKVATFPL
GNTQASTTVSVLVEPRVYVSAGSVALIDEGNETVVATCIAERARPPAEVSWETDLFGQSE
VSLQDEANGTTSTQVRYLWQPTRHVQGHALTCVVRHPALHTDFRIPYQLNVQYAPDIVVV
GYDGDWYVGRENIQLTCKANANPPAHHFTWIRLDGKMPEGVEIVNNTLLFLRPLQRNDSG
VYRCEVANDINLRSRDLRIRVQDPPTTSMPSTTPAPVLTGSASSSTSVGDKRRVLFTSPT
LAALPPDNHLGTIVGGAVGGALFLLLLLVVGGVCYLRQRQTFRGDYYTKQYLGPSDMQKA
PPQHKLHPTKPANNVYLDKDREEWGDRERNHVRDRERLHMHPTSTTIINNHREPEYQPNG
LTRAMRNGDHHDHLRSYPSPHQTGHARYAAPSHPLSTGSPYLSDDCYDSGAEGDYVSHMD
GSVISRREWRYFPLILILIMEGDVIFSSLTHHTACAPVHHMENQSQEKMANSVAVAGAVM
GAVLALFLIAVFTIVLLTARKTSAPTYTDKGQFHDKLANQPLPFHSGGRPLADHHSQMMF
VMRETESDTAHRAVRQFEIAERTPVRLTPREPRSPSHQPLSYQEWVCHQNGADRIYINHR
EHYV
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgagccctgcgttatcatggccatggcataacctcggcattagcaggcctggttcctcc
atcacccagcagagacatactcccctgtctggtacaggaggcctggttcctccatcaccc
agcagagacatactcccctgtctggtacaggaggcctggttcctccatcacccagcagag
acatactcccctgtctggtacaggaggcctggttcctccatcacccagcagagacatact
cccctgtctggtacaggaggcctggttcctccatcacccagcagagacatactcccctgt
ctggtacaggaggcctggttcctccatcacccagcagagacatactcccctgtctggtac
aggaggcctggttcctccatcacccagcagagacatactcccctgtctggtgtggggggc
agtcaggtgttggttccccagaaggtgagtgctgtattggggaagaatgtgacgttgggc
tgtagcgtggaggtgggggccaacctcagtcttacccagagttcctgggagcgccggctc
cccacaggctcggtgactgtggcggtgtacaatcccgtgtttggcatctcgatcccccca
aactatgtgcgccgcctgtccttccgctcgccctcctcccatgacgccaccatcgtactg
gaggatgtgggctttgaggacattggagtgtacacctgcaaggtggccaccttccccctg
ggcaacacacaggcctccaccactgtcagcgtgctcgtggagcccagggtgtatgtgtcg
gctggctcggtggctctgatcgacgagggcaatgaaacagtggtggccacctgcatcgct
gagcgggcccggccccccgccgaagtctcctgggaaacggacctgtttggccaatcagag
gtgtcgctgcaggacgaggcaaacggcacgaccagcacccaggtgcgctacctgtggcag
cccacccgccacgtccagggtcacgccctcacctgtgtggtgcgccatcctgccctgcac
acagacttcaggatcccctaccagctcaacgtgcagtacgccccagacatcgtggtggta
ggttatgacggtgactggtatgtgggccgtgagaacatccaactgacctgcaaagccaac
gcaaacccaccagcacaccacttcacatggatcagactggacgggaaaatgccagagggg
gtggagatagtgaacaacacgttgctgtttctgaggcccctccaacggaatgactctgga
gtctacaggtgtgaggttgccaatgacatcaacctacgcagcagggacctgcggatacgc
gtacaagatcctcccaccacctccatgccctccaccacccctgcgcctgtcctaaccggc
tctgcctcctcatccacctctgtgggagataagcgacgggtcctcttcacctcccccacc
ctggcagccctgccccccgacaaccacctgggcaccatcgtgggcggggctgtgggcgga
gccttgttcctcctgctgctgctggtagtgggcggggtatgttacctacgacaacggcag
accttccgcggggactactacactaagcagtacctagggccttcagacatgcagaaggct
cctccacagcacaagctccaccccactaagcctgccaataacgtctacctagacaaggac
cgcgaagagtggggcgaccgcgaacgcaaccacgtgcgggaccgtgaacgcctccacatg
catccaacatcaacaaccatcataaacaaccacagagaaccggagtaccagcccaacggc
ctcacgagggcgatgaggaacggagaccaccacgaccacctgcgtagctaccccagcccc
caccaaacaggccatgctagatacgctgccccgtcacacccactgagcactggctccccc
tacctatcggatgactgctatgacagcggggctgagggggactatgtctcccatatggat
ggctcagtgatctcacgcagggagtggaggtattttcctctgattttgatcctcatcatg
gaaggtgacgtcatctttagctccctcactcatcatacagcctgtgctccggtgcatcac
atggagaaccagtcccaggaaaagatggcgaactctgttgctgtggcaggggcagtgatg
ggggctgtcctcgccctcttcctcatagccgtcttcaccatcgtcctcctcactgcacgg
aagacctcggccccaacgtacacagacaaaggtcagtttcatgacaagctggccaatcag
ccgctcccgttccatagcggtgggaggcccctagcggaccatcactcccagatgatgttc
gtcatgagggagacagagagcgacacagctcacagggctgtgcggcagtttgagatcgca
gagagaacacctgtcaggctcacaccccgggaaccccgaagcccctcccaccagcctctg
tcctatcaggagtgggtgtgtcaccagaacggggcggatcgcatctacatcaaccaccgg
gaacactatgtgtga
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