Salvelinus namaycush (lake trout): 120057705
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Entry
120057705 CDS
T07522
Name
(RefSeq) ATP-dependent RNA helicase DDX19B-like
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03013
Nucleocytoplasmic transport
snh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120057705
03015 mRNA surveillance pathway
120057705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120057705
Enzymes [BR:
snh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120057705
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
120057705
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HNF-1_N
Motif
Other DBs
NCBI-GeneID:
120057705
NCBI-ProteinID:
XP_038862129
UniProt:
A0A8U1C5C7
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All DBs
Position
2:332662..339151
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AA seq
502 aa
AA seq
DB search
MSADSWAQAVDEQEAAAESIGSLQIKDKPEENGTANTALATTTTTTTTTTNTAAASATTP
AKTGGEGDKTGEEDDKDDKAAQSLLNKLIRSNLVNTTNQVEVLQRDPNSPLYSVKSFEEL
RLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSHVD
PNNKFPQALCVSPTYELALQTGKVIEQMGKHYSEVKLVYAIRGNKLPRGTQLQEQVVIGT
PGTMLDWCLKFKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPKQCQMLLFSATF
EETVWNFAQRIVPDPNIIKLKREEETLDTIKQYYVLCNSKEEKFMALCNIYGAITIAQAM
IFCHTRKTAGWLAGELSREGHQVALLSGEMQVEQRAAVIDRFRDGKEKVLVTTNVCARGI
DVEQVSVVINFDLPVDRDGNPDNETYLHRIGRTGRFGKRGLAINMVDSRFSMNVLNKIQD
HFDKKIEKLDTDDLDEIEKIAG
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcagactcctgggcccaggctgtggacgagcaagaagccgccgcggaatcgatt
ggtagcctacaaatcaaagacaagcccgaggaaaatggtactgccaacactgcattggcg
acgactacgacgacaacaacaacgacgacaaacacagcagcagccagcgctacaacgcct
gcaaagacaggaggagagggagacaaaacaggggaggaggacgataaagatgacaaggcg
gcacagtcgttattgaataagttgatacgcagtaatctagtgaacacaaccaatcaagta
gaagtcctacagagggatcccaactctccgctttactctgtcaaatccttcgaggaacta
cggcttaaacctcagctgctccagggagtgtacgccatgggcttcaaccgaccctccaaa
atccaagagaacgcattacccatgatgctcgctgaacccccacagaacctgatagcccag
tctcagtcagggacggggaagactgctgcctttgtcctggccatgctcagtcatgtggat
cccaacaacaaattcccacaggctctctgtgtgtctcctacctatgagctggccctgcag
acggggaaggtcattgagcagatggggaagcactactcagaggtcaaactagtctacgcc
atcagaggaaacaaactgccgagaggtactcagctccaggagcaggtcgtgatagggacg
ccaggcaccatgctggactggtgtctgaagttcaagttcatcgaccccaagaagatcaaa
gtgtttgtcctggacgaagctgacgtcatgatcgctacacagggtcatcaggaccagagt
atacgcattcagaggatgctacccaaacagtgccagatgctgctattctcggccacattt
gaggagacggtgtggaactttgcccagcgcatcgtcccagaccccaacatcatcaagctg
aaacgggaggaggagacgctggacaccatcaagcagtactacgtcctctgtaacagcaag
gaggagaagttcatggccctctgcaacatctacggagccatcaccatcgctcaggctatg
atcttctgtcataccaggaaaacggcggggtggttggcaggggagctgtcccgggaggga
caccaggtggcgctgctcagtggtgagatgcaggtggagcagagagctgctgtcatcgac
cgcttccgagacggaaaggagaaggtcctggtcaccaccaacgtctgtgccagaggtatt
gacgtggagcaggtttccgtggtgataaactttgacctgccggtggacagagacggtaac
ccggacaacgagacgtaccttcatcggattggccgcacgggtcgttttgggaagcgggga
ttggccatcaacatggtggacagcaggttcagcatgaacgtcctaaacaagatccaggat
cacttcgataagaagatcgagaagctggacacagatgatctggatgagatagagaaaatc
gccggctga
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