Salvelinus namaycush (lake trout): 120058145
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Entry
120058145 CDS
T07522
Name
(RefSeq) protocadherin-17-like
KO
K16499
protocadherin delta 2
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120058145
Cell adhesion molecules [BR:
snh04515
]
Cadherins
Protocadherins
120058145
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
PRIMA1
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
120058145
NCBI-ProteinID:
XP_038862541
UniProt:
A0A8U1BXD4
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Position
Sna13:42568018..42572202
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AA seq
909 aa
AA seq
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MRLPVIFFLLFWAKARTLKNLNYSVPEEQGPGTVIGNIAKDAGFGPVEKGKKSNFRVLEN
SAPHLIDVDSESGLLFTKQRIDRETLCKRNPKCQLSMEVFANDKEICMIKIDVVDINDNS
PSFPSDHINIDISENAAAGTRFPLTIAHDSDSGQNGIKTYQVTRDDYNTFSLDLKLRGDG
TIYPELVVQRPLDREDQSHHTLLLTAIDGGEYPRSGSMQINVRVTDSNDNSPVFDKPGYM
LELPENSPPGRILIDVNATDQDEGSNGQVVYSFSGYASDRVQELFSIDPKTGVIKIQGEI
DYEDNPTIEFDVQAMDLGPNPIPGHCKISVKVLDKNDNWPVISFVSVRQGAISEAAPPES
VIALVRVTDKDSGRNGQLQCRVLGNVPFRLQENNDNFYTLLTDRPLDRELKDEYNVTIVA
RDNGIPSLNYTKSFTVKILDENDNAPRFTKTVYVLQVPENNIPGEYLGSVLAHDPDIGQN
GTVSYSILPSHIGDVSVYTYVSVNPTNGAIYASRSFNYEQTKFFEFKVQAKDAGSPHMEG
SATVRVSVLDVNDNLPVIVLPLMLNDTAEIMVPRNVGLGYIVTTVRAVDQDHGESGRLTY
EIWEGNEEHLFEMDPVAGEVRTAHAVWEDVAPAVELVVKVTDHGKPPLSAVAKLIIKANT
GAMAAGESSASGEQQHWDMSLPLIITLCIISLMLLAVMTTIAVKSKHQDKEAGNYNCRMA
EYSNSNPPVGNGKKKRINKSDIMLVQSEVEERDSVSRMNVVSSPSLITSPICFDYQATSP
LPLTLPRSEVMYLKTTFNSLTVPRAGCHSSFAGLTTETPMNRMSVIQTDNFPSEPNNVAN
RQPFAQSSSTFKDAERASLRDSGHGDSDLADSDQDTNKGCACNTSAREALKMKATAVNGQ
PLDQEPPSV
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcttcctgtcatatttttccttctcttctgggctaaagcccggacactgaaaaat
ctcaattattctgttccggaggagcagggacctggaactgttatcggaaacattgctaag
gatgccggatttggaccggtggagaaaggaaaaaaatcgaactttcgagttctggagaat
tctgctccacatctcattgatgtggattcggagagtgggctgctttttaccaaacagcgg
attgacagggagacattgtgcaaacgcaaccccaagtgtcagctctccatggaagtgttt
gccaacgacaaggaaatatgcatgatcaagattgatgtagtggatataaacgacaactcc
cccagtttcccctcagatcacatcaatattgatatttcagagaacgcagctgctgggaca
cggttccctttaacaattgcacacgactcagattctggacaaaacggaataaagacttat
caggtcaccagagatgattacaatacattttctttggacttgaaattgaggggtgatgga
accatatatcctgaattggtggttcagcgccctctagatagggaagatcagtctcatcac
actctccttttgacagccattgatggtggggagtatccaagatcagggtccatgcaaatc
aatgtgagagttactgattcaaacgataatagcccagtatttgacaaacccggctacatg
ctggagcttcctgaaaactcaccacctggaagaatactgatagatgtgaatgcaacagac
caagatgagggcagcaatggacaggtagtctattctttcagtggatatgcatctgataga
gtccaggagttgttttctattgatcccaaaacaggtgtcattaagattcagggagaaatt
gactatgaggataatccaaccattgaatttgacgtgcaggccatggacctggggcctaac
cccatccctggccattgtaagatttcagtcaaagtgcttgacaagaatgataactggccc
gtgataagttttgtctccgtccgccagggagctatcagtgaggcagcgcctccagaatct
gtcatagccctggtgagagtcactgataaggattctgggagaaatggccagctccagtgc
agggtgcttggcaatgtacctttcaggctgcaggaaaacaatgataatttttacactctg
ctcacagacagacctctagacagggaactgaaagacgaatataatgtgaccatagtggcc
agagacaatggaataccctccttgaattacaccaaatcatttacagtgaaaatcttagat
gagaatgacaatgcgcctcgtttcaccaagacagtgtacgtgctccaggtgcctgagaac
aacatcccaggggagtacttaggctcagttctggctcatgatccagatataggtcagaat
ggaactgtgtcttactccattttaccgtcgcacatcggagacgtgtcagtttacacctac
gtgtctgtcaatcctaccaacggagccatttacgcctcaaggtctttcaactacgaacaa
actaagttctttgagttcaaagttcaagctaaagacgcaggatctcctcatatggagggc
agtgccacagtcagggtcagtgtgcttgacgtcaatgacaatctaccagttattgtatta
cccctaatgctaaatgatactgcggaaatcatggtccctagaaatgtaggcctggggtac
atagtgaccacagtgagagcagtcgatcaggaccacggggagagcggtcgtctgacctac
gagatctgggagggtaacgaggaacacctgtttgagatggaccctgtggccggcgaggtg
aggactgcccatgctgtgtgggaggacgtggccccagctgtggagctggtagtgaaggta
accgatcacggcaagcccccactgtctgccgtggctaagctgatcattaaggccaacaca
ggagccatggcagcaggggagtccagcgccagcggggagcagcagcactgggacatgtcc
ctgcccctcatcatcaccctctgcatcatctccctcatgctcctggctgtcatgactacc
atcgccgttaagtccaagcatcaagataaggaggctgggaattataactgccgtatggcc
gagtactccaactccaatcccccggttggaaacggcaagaagaagaggatcaacaagagc
gacatcatgctggtgcagagcgaggtggaggagagggactctgtgagcaggatgaacgtg
gtgagcagcccgtctctcatcacctcacctatctgtttcgactaccaggcgaccagcccc
ctgcctctcacgctgcccaggtcagaggtcatgtatctgaaaaccacttttaatagcctg
acggtacctcgggctggctgtcactcaagcttcgcggggcttaccacagagactcctatg
aatagaatgtcagtgatacagacggataattttccttcggagccgaataacgtggccaac
aggcaaccatttgctcaaagcagctcaacttttaaggatgcagagcgcgcgagcctccga
gacagtggccatggtgacagtgacctggctgatagtgaccaggatactaataaaggctgc
gcctgcaacacgtctgccagggaggccctcaagatgaaagccacagcagttaatggccag
cctcttgaccaggaaccgccctcagtgtaa
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