Salvelinus namaycush (lake trout): 120058197
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Entry
120058197 CDS
T07522
Name
(RefSeq) integrin beta-2-like
KO
K06464
integrin beta 2
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04145
Phagosome
snh04514
Cell adhesion molecule (CAM) interaction
snh04517
IgSF CAM signaling
snh04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
120058197
04517 IgSF CAM signaling
120058197
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
120058197
09142 Cell motility
04810 Regulation of actin cytoskeleton
120058197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
snh04131
]
120058197
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
snh04147
]
120058197
04515 Cell adhesion molecules [BR:
snh04515
]
120058197
04090 CD molecules [BR:
snh04090
]
120058197
Membrane trafficking [BR:
snh04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
120058197
Exosome [BR:
snh04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
120058197
Cell adhesion molecules [BR:
snh04515
]
Integrins
Integrin beta subunits
120058197
CD molecules [BR:
snh04090
]
Proteins
120058197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_B_tail
Integrin_b_cyt
PSI_integrin
EGF_integrin
vWA_SIBA-E
EGF_2
I-EGF_1
Motif
Other DBs
NCBI-GeneID:
120058197
NCBI-ProteinID:
XP_038862614
UniProt:
A0A8U1EL33
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All DBs
Position
Sna13:complement(7060062..7083094)
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AA seq
777 aa
AA seq
DB search
MYTCVSLLLLLMGRGVLSQEVEVCSKTVINSCSDCIRSGAYCTWCKQLNFTKPGEQEAAR
CDTRAQLEERGCKEKDIISPQNTLTVTKNTALSTDAFVKDEPIQLRPQEVNLKLRPGLPR
TFKLDFRRVEGYPVDLYYLMDLSYSMEDDLRSIKTLGNELFKALQGITKQGRIGFGSFVD
KTVLPFTNTNPEKLKKPCAEKEQFCQPAFGYRHVLSMTENEADFKKEVDKQRISGNLDSP
EGTLDAIMQAAVCGDRIGWRNSSTRLIVLTTDDGFHMAGDGKLAGILEPNDERCYMDNKL
YTKSNDMDYPSVGQVATQLEKNNIQPIFAVTKNMEKVYRELSRMIPKSEVGVLSEDSKNV
VELIQAAYNRLSSKVTVTHDALPDNVRVTYTPLCPGGGPAGDKGVCDNVKVGDLVSFNVT
VTADECIDREMSFLIGPLGIKDKLKVSLSTRCECECDDPKEEEHKDCDRKGKVNCGMCSC
KAGFVGQRCECSIGEKDESSLRAACRKDNGTECEGRGDCVCGICQCYALQGGSTYYGTHC
ECENESCEKFQNKLCGGNGKCRCKNCECNPEYEGTACQCKKSDEQCRTPSGSVCSGRGTC
QCNQCKCIEGYQRPFCLTCPACQTPCITKGKCIECLGFQTGPFSKNCSQTCKSINEFEMV
ETLPPGKPCDVRDVENCRVFFTIKQLDGEDNYTAQILKTRECPELPNIYAIIGGSIAAVA
LIGLVILLIIKALFYLNDLKEFRRFENEQKKGKWMPGDNPLFMNATTTVANPTFTGE
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgtatacgtgtgtgtctctcctgctcctgctgatgggcagaggtgttctctcccaggaa
gtggaagtatgttctaaaacggtgatcaactcctgcagcgactgcatcagatcaggagcg
tactgcacgtggtgcaaacaactgaacttcaccaagccaggtgagcaagaagcagctcgc
tgtgacacccgagctcagctagaagagaggggctgcaaggaaaaagacatcatatcccct
cagaatacccttactgtgactaagaacaccgccctgtccaccgatgcatttgtcaaggac
gaacccatccagctgcgtcctcaggaggtcaatctgaagctcaggccagggctgcctcgg
acgttcaagctggactttcggagagtggagggctatcctgttgatctctactacctgatg
gatctctcctactccatggaggacgatctgaggagcatcaagactctgggaaacgagctc
tttaaagctctgcaaggcatcacaaaacaagggcgaataggcttcggctctttcgtagac
aagactgtcctgcctttcactaacaccaacccagagaagctgaagaagccatgcgccgaa
aaggagcagttctgtcaacctgcctttggctacaggcatgttcttagcatgacagagaac
gaagctgactttaaaaaggaggtagacaagcagcgcatctctgggaacttggactcccct
gaagggacgctggacgccatcatgcaggctgcagtatgtggggacaggattggctggagg
aatagtagcactcggctaatcgtcctgaccaccgatgatggcttccacatggcaggggat
ggcaagctggctggcatactggagcccaacgacgagagatgttacatggacaacaagctg
tacactaagagcaatgacatggactatccatctgttggtcaagtggctacacagttagag
aagaacaacattcaaccaatctttgctgtgacgaagaacatggagaaggtatacagggaa
ctcagtagaatgatccccaagtctgaggtgggagtattgtcagaggactccaaaaatgtt
gttgaattgatccaagctgcctacaataggctctcctccaaagtgacggtgactcatgat
gctctccctgacaatgtgagagtcacttacactccactctgtcctggagggggacccgcg
ggggacaagggggtctgtgataacgtcaaagtaggagatttggtgtctttcaacgtaaca
gtgacggcagatgaatgtatagacagggagatgtcttttctgattggcccattgggcata
aaagacaagctgaaggtgagcttgtcgactcgctgcgagtgtgaatgtgatgaccccaag
gaggaggaacacaaggactgcgacaggaagggcaaagtcaactgtggcatgtgcagttgc
aaagccggcttcgtgggtcagaggtgcgagtgctccattggggagaaggacgagagctct
ctgagggcggcatgccgaaaggacaacggcacggagtgcgaaggacgaggggactgtgtg
tgtggcatttgccagtgctatgccctacaaggtggcagcacctactacggcacgcactgc
gagtgtgaaaacgagagctgcgagaagtttcagaacaaactgtgtggagggaacgggaaa
tgccgttgtaaaaattgcgaatgcaaccccgagtacgaaggcaccgcctgccaatgcaag
aagtcggacgagcagtgtcgcacaccaagcgggagtgtgtgcagcggcaggggcacatgc
cagtgtaaccagtgcaagtgtatcgagggctaccagcggcccttctgtctgacctgtccc
gcctgccagactccctgtataaccaaggggaagtgcatcgagtgtctgggctttcagaca
ggcccgttcagtaagaactgctcccagacctgtaagagcattaatgaatttgagatggtg
gagacattgccacctggtaagccttgtgacgtgagggatgtggagaactgtcgggtgttc
tttaccattaaacagttggatggagaggacaactacaccgcccagatactaaagaccaga
gagtgtccggagttgccaaacatctacgccatcattggaggctccattgcggccgtggcc
ctgatcggcttagtgatcctgctcatcatcaaagccctcttctacttgaatgacttgaag
gagttccgcaggtttgagaatgagcagaagaaaggaaagtggatgccgggagacaatcca
ctattcatgaacgcgaccaccaccgtggctaaccccaccttcactggagaataa
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