Salvelinus namaycush (lake trout): 120058210
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Entry
120058210 CDS
T07522
Name
(RefSeq) WD repeat-containing protein 75-like isoform X1
KO
K14552
NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120058210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
snh03009
]
120058210
Ribosome biogenesis [BR:
snh03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
120058210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR75_2nd
Beta-prop_WDR75_1st
WD40_Prp19
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_EML
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_HPS5
Beta-prop_IFT122_1st
Beta-prop_IP5PC_F
NBCH_WD40
Beta-prop_VPS8
Beta-prop_WDR19_1st
DUF1623
Motif
Other DBs
NCBI-GeneID:
120058210
NCBI-ProteinID:
XP_038862627
UniProt:
A0A8U1BZ03
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Position
Sna13:complement(9017849..9039540)
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AA seq
830 aa
AA seq
DB search
MVEHAEIRMVHRGGSKINFRDPVITNDSRFLLCAAGESVNVYSTSTEEYVHDLQGHTDLV
TGVVLNPSNHLQVYSCSADGTVRLWDFTDGILIKTFIIGYPIYSIYVSEKHGGVVFVVVP
MANYKSSELFQLVAVNLPRSGDQEVEARELSAVLCDVSPHPGAASFGREGEYIAAVKGLQ
LEVFFFKKQKSYRFSLKSGTKKGAKNAFTCVSCHPKEDCVATGHADGKIRMWRNFNQKKE
YTYSTLHWHHGAVNTLCFTPEGTNLLSGGIESVLVQWHYTQENQRDFLPRLGAAITHIAV
SPDGSLFCTSHSDNKITIIQSCVKVSAIIQGLVKGDGVWTNLIIDPRSKALVLNGKPGHL
QFYSLHRDKQLYNLDIVQQEYIHEEGLDQFEVVKAAFDARGDWLATVEERRKKGAELEIN
LKLWAYDKLTQSFVLNTTVTAPHEDRITAMYFSPSPETTMLVTTSLDGHFKAWLLADHSD
TKAEGFWACDFVGGYHLLKPGCCSFSADGSLLAVGFQEVVTVWSPASWELLTTLSQPPGA
IRDLCFGRLSCSKYLLGTSTKNQLCCWNLLTCSLEWSTPMDVSLLQTDPLSENIAAFCSQ
SGSSDLFVFKPSEPRPLYSQKALCTGKVQHAVFAPRDQMLESCEERTQWLNRSQLYFFTQ
HMDLLTFSTKTEEDRLLASSKQLMCCRDAVTPFYLLLGKHRRQQLEKQEALTNPMAERTQ
LPQGSIAIKELLHTPAHVLPSASFLCTMFVRSLLISSSSAGEEKEHEEEEMEREKEEEDS
EGEADPRLGESAACGPPEEFGAPALTKAQERELRKVKTFDHSWLSSLLDC
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atggtggagcacgcagaaatccgcatggttcaccgtggtggcagcaaaataaactttagg
gatccagttattacaaatgattccaggttccttttgtgtgccgcgggggagtccgtgaac
gtgtacagtaccagcacagaggaatacgtccatgatttgcagggacacactgacctggtg
acaggcgttgtcctcaacccttcaaaccatctgcaggtatactcgtgttcagcagatggc
actgtccgattgtgggacttcacggatggcatcctcatcaagaccttcattatcgggtac
ccaatctactccatttacgtctcggaaaaacatggaggagttgtttttgtcgtcgttccc
atggcaaattacaaaagctctgagctgttccagctggtggctgttaatctgccccgcagt
ggggaccaggaagtggaagcgcgagagctgtcggccgtgctctgtgatgtcagcccccac
cctggggctgcctcctttggcagagagggtgaatacatagctgctgtcaaaggtttacag
ctcgaggtatttttcttcaaaaagcagaagtcgtacaggttttccctgaagtcagggacg
aagaaaggggccaagaatgccttcacctgtgtttcgtgccaccctaaagaggactgtgtt
gccacaggtcacgcagatggcaagattcgcatgtggagaaacttcaaccagaagaaggag
tacacatactccaccttgcactggcaccacggtgctgtcaacacactgtgcttcacccca
gaaggcactaatcttctgagtgggggcatagagtccgtgctggtccaatggcattacaca
caggagaaccagagagacttcttaccgcgcctgggcgccgccatcacacacatcgccgtg
tcacctgacggttccttgttctgcacctcgcactctgacaacaagatcacaatcattcag
agttgtgtcaaagtgtcggccatcatccaggggctggttaaaggcgatggtgtgtggaca
aacctaatcatcgacccgcgcagtaaagctttggtgcttaacgggaaaccagggcacctg
cagttctactctctccaccgcgacaagcaactctacaacttggacatagtacagcaggag
tacatccacgaggagggtctggaccagtttgaggtggtcaaagcggcattcgacgcccgc
ggcgactggcttgctaccgtggaggagaggagaaaaaaaggcgctgagctggagatcaat
ttgaagctgtgggcgtacgacaagctaactcagagttttgtgctgaacaccacagtgaca
gctccccacgaggaccggattacagccatgtacttcagcccctccccagagaccaccatg
ctggtgaccactagcctcgacggccacttcaaagcctggctgctggcagaccactcagac
accaaggcagagggcttctgggcatgtgactttgtgggtgggtatcatctcctgaagccc
ggttgctgctccttctcggctgacggctcccttttggccgtgggcttccaggaggtggtg
acagtgtggagccccgcttcctgggagctactcaccactctgtcccagcccccaggcgcc
atcagggacctttgttttggacggttaagctgttccaagtacctgttggggaccagcacc
aagaaccaactctgctgctggaacctcctcacctgctcactggagtggagtactcccatg
gacgtaagcctgctccagactgacccgctgtctgagaacatcgctgccttctgcagtcaa
tctggcagctctgacttgtttgtgttcaagcccagtgagccacggcccctctactcccag
aaggctttgtgcacgggcaaggtgcagcatgcagtcttcgcgccgcgcgaccagatgctg
gagagctgcgaggagcgtacccagtggctcaacagatcccagctctacttcttcacccaa
cacatggatttgttgacttttagcaccaagactgaagaggacagactgttggcatccagt
aaacagctcatgtgttgccgtgacgccgtgacgccgttctacctgttgttagggaaacac
agacggcagcaactggagaagcaggaagcgctgaccaatcccatggcagaaaggactcag
ctcccacagggttccattgccatcaaggagctgctgcacaccccagcccacgtcctgcct
tcagcctcgttcctctgcaccatgtttgtccgctccctgctcatctccagctcctctgcc
ggagaggaaaaagaacatgaagaagaggaaatggagagagagaaagaggaagaggactcc
gaaggggaagcagacccccgtctgggggaatcggcagcatgcggcccacccgaggagttt
ggggcaccagctctcaccaaagcccaggagagggaactgaggaaagttaaaacatttgac
cacagctggctcagcagcctcctggactgttaa
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