Salvelinus namaycush (lake trout): 120058224
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Entry
120058224 CDS
T07522
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120058224
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
snh03041
]
120058224
Spliceosome [BR:
snh03041
]
Complex A
U1 snRNP components
U1 related factors
120058224
Complex B
120058224
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
DUF4936
Motif
Other DBs
NCBI-GeneID:
120058224
NCBI-ProteinID:
XP_038862652
UniProt:
A0A8U1BZU4
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Position
Sna13:complement(10251960..10287553)
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AA seq
893 aa
AA seq
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MSSDDNNGQSQAPSFAGVPPSGMPPPFMGPPGMPPHYPPMGMPPMGQRPPNMAPMPPGMM
PPGMMPPMGGPPMGQMQGMMPPMMPGMMMPHRMPAATMQPTGPPGVDTTVTAVPGTVGTT
NGSPQDDQPKNKSVWTEHKSLDEKTYYYNTETKQSSWEKPDDLKSPAEQMLSKCQWKEYK
SDNGKAYYYNSHTKESRWTKPKELEDLEAMIKAEENGMAEVGAPGTVITPNLQLDSAASM
ATMMMEMPAMRPATIVSVEQMSLVPMLVAEVSADSPVNSTEDLVSMEVSASNDASKEERP
ELVKKTYKWNTKEEAKQAFKELLKEKGVSSNASWEQAMKMIINDPRYSALPKLSEKKQAF
NAYKVQTEKEEKEETRIKYKESKETYQRFLENHEKMTSTTRYKKAEQMFAELDVWSTVPE
RDRLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNP
TFAEDEELQNMDKEDALICFEEHIRALEKEEEDEKQKTLLRERRRQRKNRESFQKFLDEL
HDNGQLHSMSAWMEMYPTVSSDIRFANMLGQPVYGVYSAGSTPLDLFKFYVEDLKARYHD
EKRIIKDILKDKNFMVEVNTSFEDFGTVISSDKRATTLDAGNIKLAFNSLLEKAEARERE
REKEEARKMKRKEATFKSMLKQATPALEPEATWEEVRERFLKESAFEDVTLESERKRIFK
DFMHVLEHECQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEGEDDYHTKKKKRSPSKSPS
ERSSSGESDRSYKKSKKHKKKGKKRRHKSQSPESEGERKEKGGRERDSKREKDQEKEKEN
DKSRGKSRSESKQKSPKRKSTKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagatgataataatggccagagccaagcaccttcttttgctggggtcccaccc
tcagggatgccaccgccttttatgggaccaccaggaatgccgcctcattatccaccaatg
ggaatgccacccatgggacagaggcctcccaacatggctcccatgccacctggtatgatg
ccgcctggcatgatgccaccaatgggagggccaccgatgggacagatgcaaggcatgatg
ccacctatgatgcccgggatgatgatgccacatcgcatgccagctgcgacgatgcagcca
acaggaccgcctggagtggacacaactgtcaccgctgtgcctggaacagttggtaccaca
aatggctcgccacaggatgaccaaccaaagaataagtctgtgtggacagaacataagtct
ctggatgagaagacctactactacaacacagagaccaagcagtcttcctgggaaaagccc
gacgacctgaaatctcctgcagaacaaatgctgtctaaatgccaatggaaggagtataaa
tcagacaatgggaaggcgtactactacaactcccacactaaggagtcccggtggaccaaa
cccaaagagcttgaagatctggaagccatgataaaagctgaggagaatgggatggcggag
gtaggtgctcctggcactgtcatcacccccaaccttcagctcgacagcgctgcttcgatg
gcgaccatgatgatggaaatgccggccatgaggccagctacaatcgtctcggtggaacag
atgtccctggtgcccatgcttgtagctgaggtcagcgctgactcgcctgtcaactccaca
gaggacttggtcagcatggaggtttcagccagtaatgacgcctcaaaagaggagaggcca
gagctagtgaagaaaacgtacaagtggaacacgaaagaagaggccaagcaggccttcaaa
gagctcctgaaggagaagggcgtttcatccaatgcatcttgggaacaagccatgaaaatg
atcatcaatgacccacgctacagtgctctgccgaaattaagtgagaaaaagcaggccttc
aatgcttacaaggtgcagacggagaaagaggagaaggaggagactaggatcaagtacaag
gagtccaaggaaacgtatcagcgatttttggaaaaccacgagaaaatgacatctacaacc
agatataagaaagcagagcagatgtttgcggagctggatgtgtggagcaccgtcccagag
agggacagactggagatctatgaagacgtcctcttctacctagccaagaaggagaaggag
caagccaagcagctgaggaagaggaactgggaggctctgaagaacatcctggacaacatg
gccaacgtgacgtaccgcaccacctggtccgaggcccagcagtaccttctggacaacccc
acctttgcagaggacgaggagctccagaacatggacaaagaggatgctctgatctgtttc
gaggagcacatccgagcgctggagaaggaggaggaggacgagaagcagaagacactgctg
agggagaggaggagacagcgcaagaacagagagtccttccagaaattcctggacgagctc
catgacaacggtcagctccactccatgtctgcctggatggagatgtaccccaccgtcagc
tcagacatccgcttcgccaacatgctgggccagccagtttatggtgtctattctgcaggc
tccactcccctcgatctgttcaagttctacgtggaagacctgaaggctcgctaccacgac
gagaagcggatcattaaggatatcctgaaggacaaaaacttcatggtcgaggtaaacact
agctttgaagactttggcactgtgatcagctcagacaagagagccacgacgctggacgca
ggcaacatcaagctggccttcaacagcttgctggagaaggcggaggctcgggagagggag
cgggagaaggaggaggccaggaagatgaagaggaaagaggcgaccttcaagagcatgttg
aagcaggctaccccagccctggaaccagaggccacctgggaagaagtccgagaaagattc
ctcaaagaatctgcattcgaagacgtgactctggagtctgagaggaaaaggatattcaaa
gacttcatgcatgtcttggagcacgagtgccagcatcatcactccaagaccaagaaacac
tcaaagaagtccaagaagcaccacaggaagcgctcccgctctcgatcgggctcggagtct
gaaggtgaagacgattatcacaccaagaagaagaagcgctcaccgtccaagtccccgtcc
gagcgctcctccagtggggaatctgatagaagttataagaagtccaagaagcacaagaag
aaggggaagaagaggcgtcacaagtcgcaatctcctgaatccgaaggcgagcggaaagag
aagggaggaagagagagggacagcaagcgggagaaggaccaggagaaagaaaaagagaac
gacaagtcccgggggaagagtcgctccgaatccaagcagaagtcacctaaaaggaaatct
accaaggaggagggtggctgggacacttcaggcagcgagctgagtgaaggagagctggag
aagaggaggaggactctactggaacagctggatgctccttga
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