KEGG   Salvelinus namaycush (lake trout): 120058250
Entry
120058250         CDS       T07522                                 
Name
(RefSeq) integrin alpha-6-like isoform X1
  KO
K06485  integrin alpha 6
Organism
snh  Salvelinus namaycush (lake trout)
Pathway
snh04382  Cornified envelope formation
snh04510  Focal adhesion
snh04512  ECM-receptor interaction
snh04514  Cell adhesion molecule (CAM) interaction
snh04518  Integrin signaling
snh04810  Regulation of actin cytoskeleton
snh04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:snh00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    120058250
   04514 Cell adhesion molecule (CAM) interaction
    120058250
   04518 Integrin signaling
    120058250
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    120058250
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    120058250
   04810 Regulation of actin cytoskeleton
    120058250
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    120058250
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:snh04147]
    120058250
   04515 Cell adhesion molecules [BR:snh04515]
    120058250
   04090 CD molecules [BR:snh04090]
    120058250
Exosome [BR:snh04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   120058250
  Exosomal proteins of breast milk
   120058250
Cell adhesion molecules [BR:snh04515]
 Integrins
  Integrin alpha subunits
   120058250
CD molecules [BR:snh04090]
 Proteins
  120058250
SSDB
Motif
Pfam: Integrin_A_Ig_3 Integrin_A_Ig_1 Integrin_A_Ig_2 FG-GAP FG-GAP_3 Integrin_alpha
Other DBs
NCBI-GeneID: 120058250
NCBI-ProteinID: XP_038862699
UniProt: A0A8U1C6B1
LinkDB
Position
13:13174971..13233316
AA seq 1094 aa
MVLSIRYFPIHVALFCLLEWTHISAFNLDTLNVLRKDGEPGSLFGFSLAMHRQLIPSDKR
ILLIGAPRAKALANQRANITGGLYSCDITTESDDCDRIDFDNEEDVRVENKENQWMGVTV
NSQGPGGKIVTCAHRYQRRLFVDTAQESRDITGRCYVLSQDLTIDTSSDEDGGNWKFCEG
RARGHERFGSCQQGLAATFTKDYHYVVFGAPGAYNWRGIVRVEQKNNTLLEKGFYDDGPY
EVGDENRLDPDLVPVPANSYLGFSLDSGFSITKGRGLTIVSGAPRANHCGAVVLLRKENE
ASARLSPEYILEGPGLASSFGYDVAVVDLNGDGWQDIVVGAPQFFMKEGDIGGAVYVYIN
QAGKWAKITPIRLNGTKDSMFGLAVENIGDINQDSYQDIAVGAPYADTGAGKVYIYHGST
NGINTMPAQILEGKPNNIRLFGYSLAGNMDLDKNSYPDIAIGSLSDTVLVYRARPIISIK
KDVKITPKEIDFTKKTCGNSICLTVEACFTYKANPASYSPKLTIRYAFEAEADRRKQGLI
SRVLFLNKSRTDQDFQSTGILDLRGQNKRACTKTKIRLQDNIRDKLSGIPIEVSVGILGT
KRQKRQNALPQLVPILDNSQPSKVVTEVNFLKEGCGNDNICQSNLQLEYRFCSKEPNQEV
FPPLQMQNGLPVISLSDQKDIALEVTVKNRNGDDAHEAKLVGMFPNALSFSGFRSQKTTR
DKPVLCLANQNGSQTECELGNPFKTDSRVTFYIILSTAGISLNTTEIDIDLELQTTSTQE
NTGSVKARAKVVIEMLLSVAGVARPSQVYFGGDVKGESAIKTEEEIGSLIDYEFRIINLG
KPLKSFGTASLNIQWPKENVDGKWLLYLVKISTTGLEEIPCSPETEINSLKHIQESSTSR
KKREAGGQKSGGKISLLSDQRKHKILMCGNGYDSRCVVIKCPLLGLDSSAVISLRTRLWN
ATFLENYASLNYLDIIVKASISLDAPAKNMVLRNAETQVRVTVFPEKAVAQFGGVPWWII
LVAVLAGILMLALLVFLLWKCGFFKRSKHDDSVPRYHAVRIKKEACQFKDGKAKLDSFEK
KQWMTSWNENESYS
NT seq 3285 nt   +upstreamnt  +downstreamnt
atggttctctcaataagatattttccaattcatgtggcacttttttgtttgctagaatgg
actcatatatcagccttcaacctggataccttgaatgtcctgaggaaagacggggaaccc
ggcagtttatttggattctctctagccatgcaccggcaacttattccttcagataagaga
atactgttgattggagcaccaagagccaaagctctggccaaccagagagccaacataacc
ggaggcctgtacagttgtgacatcaccacagaatctgatgactgtgatcgcatcgatttt
gacaatgaagaggatgtgagagttgagaacaaggagaaccagtggatgggggtgacagtt
aacagccagggccccggggggaagattgtgacctgtgctcatcgctaccagagacgtctg
tttgtggacactgctcaggagtcccgtgacatcacaggccgctgctacgtcctgagtcag
gacctaactattgatacgtcctctgatgaagacggagggaactggaagttctgtgaggga
cgtgccagaggccatgagaggtttggctcatgccagcagggtctggctgccacgttcacc
aaggactaccattacgtggtgtttggagcgcctggcgcctacaactggagaggcattgta
cgtgtagagcaaaagaacaacactttgttggaaaagggattttatgatgatgggccttat
gaagttggagatgagaaccgcttggatcctgacctggtgcctgtgcctgctaacagctac
ctaggattttcccttgattctggctttagcatcaccaaggggcgtggcctaactattgtg
tctggagcaccacgagccaatcactgtggggctgtggtcctgttgcgaaaagagaatgaa
gcgtcagcaagactctccccagagtacattctagaagggcctggactggcatcgtctttt
ggatatgatgtagctgtggtcgacctgaatggagatgggtggcaggatattgtagtggga
gcccctcagttcttcatgaaagagggagacattggaggagctgtttatgtctacatcaac
caggcaggaaagtgggccaagatcaccccaatccgcctcaatggaaccaaagactcaatg
tttgggctggcagtggagaacatcggtgacatcaatcaggactcctatcaagacattgcc
gttggagctccctacgctgacactggtgcaggaaaagtgtacatttaccatggttctact
aatggaatcaacaccatgcctgcacagatccttgagggaaagcccaacaacatcagatta
tttggatattctctggctgggaacatggacttagataagaattcctatcctgatatagcc
attgggtcgctctcagatacagtactcgtttacagggcaaggccaattattagtatcaag
aaggatgtcaaaattactccgaaggaaattgacttcacaaagaaaacctgtggcaacagt
atctgtttgaccgtggaagcatgcttcacctataaagcaaaccctgcatcctacagccca
aaactaactatccgctatgcatttgaggctgaagcagatcgcaggaagcaagggctgatc
tctagggtcctgtttctgaacaagtctcgcaccgaccaggacttccagtccaccggaatt
ctggacctccggggacaaaacaaaagagcgtgtaccaagacaaaaatcagactgcaggat
aacattagggacaagctgagtggtattcccattgaggtgtcagtggggatcctgggcacc
aagcgtcagaagaggcagaatgctctcccacagcttgtgcctattcttgacaactcccag
ccaagcaaggtcgtcactgaggttaacttcttaaaggaaggatgtggaaatgataatatt
tgccagagtaatttacaactggagtacagattctgttccaaagagcccaaccaagaggta
ttccctccattacagatgcagaatgggctaccagtgatctccctcagtgatcagaaggac
atagctctggaggtgacagtgaagaacagaaatggggatgatgcccatgaggctaagctg
gtggggatgttccctaacgctctctcattctccggctttcgctctcagaaaactacgagg
gacaaaccagtgctttgtttagccaatcagaatggctcccagacagagtgtgaactgggg
aatccattcaaaacagattcaagggttactttctacataatcttgagcactgctggtatc
tctctcaataccacagaaatcgacattgaccttgagcttcaaacgaccagtacacaggaa
aacacgggcagtgtgaaagcaagggcaaaagtagtgattgagatgttactttctgttgca
ggagttgcgagaccctcccaggtgtattttgggggcgatgtgaaaggagagagtgccatc
aagacagaagaggagatcggcagtttgatcgattatgaatttaggataatcaatttgggt
aagccgttgaagtcctttggcacagcctcgttgaacatccagtggcccaaagagaatgtg
gatgggaagtggctgttatatctggttaagatcagcaccactggcctggaagagatcccc
tgctccccagaaactgagatcaactctctcaaacacattcaggagtctagcacatctagg
aaaaagcgtgaagctggaggccaaaaatctggaggcaaaatctctttgttatcagaccaa
agaaagcacaagattttgatgtgtggcaatggctatgactctagatgtgtggtgatcaag
tgccctctactgggcttggacagtagtgcagtgatttctctaaggacccgtctgtggaac
gctaccttccttgagaattacgcgtctttgaactatcttgatataattgtgaaagcttcc
atcagccttgatgctcctgcaaagaatatggttctcaggaatgctgagactcaggtgaga
gtcacagtgtttccagagaaggcagtagcccagtttggtggagtcccatggtggatcatc
cttgtggctgtcctggctggtattctgatgttggcgttgctagtgtttctactctggaag
tgtggatttttcaaacgctcaaaacatgatgacagcgttccaagataccatgccgtacgg
ataaagaaggaggcttgtcagtttaaagacggaaaagccaagctggattcctttgagaaa
aagcagtggatgacaagctggaatgagaacgagagctactcatga

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