Salvelinus namaycush (lake trout): 120058414
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Entry
120058414 CDS
T07522
Symbol
ift88
Name
(RefSeq) intraflagellar transport protein 88 homolog isoform X1
KO
K16474
intraflagellar transport protein 88
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
snh03037
]
120058414 (ift88)
Cilium and associated proteins [BR:
snh03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
120058414 (ift88)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_8
TPR_14
TPR_6
TPR_19
TPR_16
TPR_7
TPR_11
ANAPC3
ARM_TT21_5th
SNAP
TPR_9
TPR_10
TPR_CcmH_CycH
TPR-S
TPR_17
MIT
ARM_TT21_4th
TPR_15
ARM_TT21_N
RPN7
HAT_PRP39_C
Coatomer_E
ARM_TT21_2nd
SHPRH_helical-1st
ARM_TT21
DUF6584
ARM_TT21_C
SPO22
RNPP_C
Motif
Other DBs
NCBI-GeneID:
120058414
NCBI-ProteinID:
XP_038862985
UniProt:
A0A8U1BSS5
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Position
Sna13:29668859..29691800
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AA seq
856 aa
AA seq
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MEHVHLAAEEDDLYSGYNDYNPTFDSEELDNDAGFQQAVRTSHGRRPPMTAKFPGTAIGG
RALGTSFGSRMPMASSMGRPMTGAVQDGAARPMTAVRAAGYSSAMTRGSTFDPLGQSKGP
APPLEGKSEDTPDEKVKILEKKVNDLIEESCLAHGHGDLQLSLDRAKEAGRKERALVRQR
EQSGNADHINLDLTYSVLFNLATQYANNDMYAEALNTYQVIVKNKMFSNAGRLKVNMANI
HFKQKNYPKAIKLYRMALDQISNSHKEMRIKIMQNIGVVFIRMGQYSDAITSFEHIMSEC
PNIKTGFNLILCYYAIGDRERMKKAFQKLICVPLGIDEEDKYIPPNDDTHANLVIEAIKN
DKLHQMERERKALAEKFIMTSAKLIAPAIEATFAAGFDWCVDMVKSSQYVELANDLEINK
AITYLRQRDFNQVGAVETLKTFEKKDSRVKSAAATNLSFLYFLEKDYDQADRYADLAMTA
DRYNPAALINKGNTVFVKKDYEKAAEFYKEALRNDSSCTEALYNLGLTYKRLGRLEESLD
CFLKLHAILRNSAQVMWQLANLFEMLEDPHQAIEWLMQLITVTPTDPQVLAKLGELYDSE
GDKSQAFQYYQESFRYFPSNIDVIEWLGAYYIDTQFCEKAIQYFERATLIQPTQVKWQLM
VASCYRRSGNYQKALETYKDIHRKFPENVECLRFLVRLCTDMGMKEVQDYATKLKKVEKM
KEIREQRVKSAREGSTRGTRREGSASSVGTPDPVRHLPKKDSVSHPEPKHSPLLDQGRDS
GHSSHGTSAKGERLSAKMRALPGSNEPYEASSQRDIDASYVDPLGAPMERPKTAAKKRNE
DDDFADEELGDDLLPE
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atggaacatgtacatcttgctgctgaggaagatgacctgtactctggctacaacgactac
aatccaacatttgattcagaggagcttgacaatgatgctggttttcagcaagcagtcagg
acaagccatgggagaaggccccccatgactgccaagtttcctggcactgccattggagga
cgggctttggggacctcttttggatctaggatgccgatggcctcatctatgggcagaccc
atgactggagctgtacaggatggagcagctaggcctatgactgcagtcagagcagcaggc
tactcttcagccatgaccagagggtctacatttgacccactgggtcagtccaaaggaccg
gctcctccattggagggcaaaagtgaagatacgccggatgagaaggtgaagatcctggag
aagaaggtgaacgacctgatagaagagagctgcctggcacacggccatggagacctacag
ttgtcccttgatagagccaaagaggcagggcggaaggagagagcgctggtgagacagagg
gagcagtcaggcaatgcagaccacatcaacctggacctcacatactctgtcttgtttaac
ttggcaactcagtacgccaacaatgacatgtacgcggaggccctgaacacttaccaggtc
atcgtaaagaacaagatgttcagtaatgcaggaaggttaaaagtgaacatggccaacatc
cacttcaagcagaaaaactaccccaaggccatcaagttgtaccgcatggccctggaccag
atctccaactcccacaaggagatgaggatcaagatcatgcagaacatcggtgtggtcttc
atccgcatgggccagtactctgacgccatcacctcctttgaacacatcatgagcgagtgc
cccaacattaagacaggctttaacctgatcctatgttactacgccatcggagaccgagag
aggatgaagaaggcctttcagaagctcatctgtgttcctctggggatcgacgaggaggac
aagtacatcccacccaacgatgacacccatgccaacctggttattgaagccatcaagaac
gacaagcttcaccagatggagagagaacgtaaagccctggctgagaaattcatcatgaca
tcagccaagctcatcgccccagccatcgaggcgacgttcgctgcaggatttgactggtgt
gtggacatggtgaagagttcccagtatgtagaactggccaacgacctagaaatcaacaaa
gccatcacctacctgagacagagggacttcaaccaggttggtgctgtggagactctgaag
acgtttgagaagaaagacagcagagtgaagagtgctgcagccactaacctctccttcctc
tacttcctggagaaagactacgaccaggctgaccgctatgccgacctggccatgacagcc
gaccgctacaacccagcggcgctcatcaacaagggcaacacagtgtttgtgaagaaggac
tatgagaaagctgcagagttctacaaggaggctctccggaacgactcgtcctgcactgag
gccctatataacttaggtcttacctataagcgtctggggcgtctggaggagtctctggac
tgtttcctgaagctccacgccatcctgaggaacagcgcccaggtcatgtggcagctagcc
aacctctttgagatgttggaggatccccaccaggccatagagtggttgatgcaactgatc
actgtgacgcccacagacccccaggtgttggccaaactgggagagctctacgacagcgag
ggagacaagtctcaggcgttccagtactaccaagagtccttcagatatttcccctccaac
attgacgttattgagtggctgggggcctactacattgacactcagttctgtgagaaggcc
atccagtactttgagagagccacactaatccagccaactcaggtgaaatggcagcttatg
gtggccagctgctacagaagaagtggaaactaccagaaagctctggagacttacaaagac
atccatcggaaattcccggaaaacgttgaatgcctgcgtttcctggtgaggctgtgcaca
gacatggggatgaaagaggtccaggactacgccaccaaactgaagaaggtggagaagatg
aaagagatcagagaacagcgggtgaagtcggcgagggagggcagcactagaggcacccgg
agagagggcagcgccagcagtgtcggcactccagatcctgttcgccacctgccaaagaag
gacagcgtctctcaccctgagcctaaacacagtcctctgctggaccaggggagagacagt
ggacacagcagccatggcaccagcgccaagggggagaggctgagcgccaagatgagggca
ctgcctggctccaacgaaccctacgaggccagcagccagcgagacatagatgcctcctac
gtggatccactgggggctccgatggagagaccaaagactgcagctaagaagcgcaatgaa
gatgacgactttgctgatgaagagctgggagatgacctactaccggagtag
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