Salvelinus namaycush (lake trout): 120058458
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Entry
120058458 CDS
T07522
Name
(RefSeq) collagen alpha-1(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04510
Focal adhesion
snh04512
ECM-receptor interaction
snh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120058458
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120058458
09142 Cell motility
04820 Cytoskeleton in muscle cells
120058458
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
snh04147
]
120058458
00536 Glycosaminoglycan binding proteins [BR:
snh00536
]
120058458
Exosome [BR:
snh04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120058458
Glycosaminoglycan binding proteins [BR:
snh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120058458
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120058458
NCBI-ProteinID:
XP_038863052
UniProt:
A0A8U1EU47
LinkDB
All DBs
Position
Sna13:complement(33914178..33949133)
Genome browser
AA seq
1592 aa
AA seq
DB search
MGFPGMQGHEGPAGPMGPKGEYGESGTPGMKGTRGPNGLPGFPGNPGLPGIPGQDGPPGS
PGIPGCNGTKGDRGTDGQSGFPGLQGPPGIPGLMGMKGDAGGVIGVIPLKGDKGFPGTPG
LLGPNGPSGPEGPPGNQGSDGPRGFPGPPGPKGEKGDRLSFQSEKGDKGQPGFRGPPGPP
GPPGPPSQEAGGNAVLLYLPGPPGQRGDTGDRGEKGFCIPHLNGVKGEQGPPGPRGKPGK
DGDNGFKGERGFPGGPGYHGTPGEKGERGPPANGDGAPGSPGPPGLPGLQGERGFPGIQG
ALGLPGRHIEGPPGEKGRPGEVGQKGDRGAEGESLRGKPGQDGLIGHPGPPGPPGDEPCD
PALEKGPPGPPGPPGLQGELGQKGDQGDTCVQCEAFGPPGLPGPQGPNGLQGYPGVAGSK
GDKGVPGPAGLDGSPGILGTPGLVGAPGAHGEPGDIYLAPGLKGDKGLPGFVGTQGLPGV
DGLPGKEGLAGLPGSKGEPAREGIKGDRGLDGDPGFSGPPGERGPPGEPGFGRPGEPGEK
GTSGQQGRPGIPGQPGVKGEPGKDVSSPGPQGSPGPRGQSGIPGLQGDRGLQGDPGMPGF
PGQKGDSGAPGIGFPGLSGPKGYSGAPGAPGLPGEPGRSGQDGFSGKPGTPGPKGEPGRG
LPGPKGSQGPPGETGFHGDKGNVGPTGIPGQEGHTGPPGAQGIQGDPGPPGQHGGTGPPG
TPGAGEPGAPGPIGPPGEPGPFGHDGVKGDKGFPGSPGLDMPGPQGEKGDSGFPGLSGSK
GLPGRPGPAGRDGFPGDPGLKGEMGVMGTPGTPGYQGSAGSPGTSGQRGNPGVSGPRGEF
GEPGPKGERGEPGLQGPPGNMSELNMEPMKGEKGDSGDPGDTGHTGEKGYPGQAGVPGMP
GKDGEHGTPGQPGEKGDTGVPGEPGSTGYPGNKGSIGEMGYPGSVGPKGAKGIVGTTGHP
GFRGTEGVKGDKGTAGLPGVGVPGPPGEKGQLGLNGFPGNAGEKGQKGGMGVPGMPGTPG
TKGDTGYIGHPGQPGQPGEKGVGGLPGSTGEPGQTGRPGEPGLQGPPGPTGEKGESGVDG
IPGSSGDRGDQGFPGRGFPGTPGSSGFKGDKGSPGFPGSPGIPGIPGTRGEKGTAGFQGS
LGQPGEQGHPGPAMEGPKGDQGVPGKPGEPGTSGVPGPAGVPGSAGGKGDKGDQGGQGVQ
GEQGLTGERGYSGLPGQSGLPGVDGLKGEMGLQGVPGFPGTKGELGVFGLKGELGDRGFT
GTKGNDGPPGPPGLHTFIKGESGFPGSQGPQGPVGPSGFPGLKGQQGMTGIQGIKGDEGN
PGINGLPGAKGEPGLLGPSGPRGYPGPPGPDGVPGQVGPPGPSSMEHGFLVTRHSQSVEV
PQCPEGTSLIYDGYSLLYIQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCYFASRN
DYSYWLTSPEPMPMNMDPITGQGIRPFISRCSVCEAPAMVIAVHSQNIMIPSCPNGWDSL
WIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLAAIE
DEEMFRKPVPTTLKAGSLRTHISRCQVCMKRT
NT seq
4779 nt
NT seq
+upstream
nt +downstream
nt
atggggttcccgggcatgcagggccatgagggacccgctgggccgatgggccctaaggga
gagtatggtgagtctggaactcccgggatgaaaggaacacgtggtcctaatggtttgcca
ggcttcccaggaaatccagggcttccgggcatccctggacaagacggcccccctggatcg
ccaggtatcccagggtgcaatggaacaaagggagatcgagggacagacggacagtctggg
ttccctggtctgcagggtcctcctggtatccccggacttatgggaatgaaaggagatgca
ggtggtgttattggagtcatcccactgaaaggagataaaggattccctggaacacctggt
ttactgggtcccaatggcccctcagggcctgaaggcccaccaggaaaccagggatcagat
ggacccagaggtttccctggcccacctggccccaaaggagaaaagggtgacaggctgtct
ttccagagtgagaagggagacaagggtcaaccagggttccgtggcccccctggcccccct
ggcccccccggacctccatcacaggaagcgggaggaaatgctgttttgctttacctccca
ggaccaccgggtcagagaggagacacaggagacagaggagagaaaggtttttgcattcca
catctaaatggggtcaagggtgaacaaggtccaccaggaccaaggggaaaacctggcaaa
gatggagacaatggatttaagggagagagaggctttcctggcggccctggataccatgga
acaccgggtgaaaagggagagagaggccctccagcaaatggtgatggtgctcctggctct
cccggaccccctggtctcccaggcttacaaggagaaagaggtttccctggtattcaagga
gctctgggcctaccaggcaggcacattgagggaccacccggagagaagggccggccagga
gaggtgggtcagaagggagacagaggtgcagaaggggagtctctcagaggaaagcctgga
caagatgggcttattggacaccctggtcctcccggaccccctggggatgagccatgtgat
ccggcccttgaaaagggaccacctgggccccccggcccacctggactacagggggagtta
ggacagaaaggtgatcagggagacacgtgtgtgcagtgtgaagccttcggcccacctgga
ctccctggcccccaggggcctaatggactgcaaggttatcctggagtggcaggcagtaaa
ggagacaagggtgtgcctggacctgctgggcttgatggaagccctggtattttaggtact
cctgggttggtaggtgctccaggagcccatggtgaacctggcgacatctacctggctcca
gggctgaagggggacaaaggtctgcctggtttcgttggcacacaaggtctacctggtgta
gatggactgccagggaaagaaggactagcaggcctgcctggatccaaaggagaacctgcc
agagagggcatcaagggggaccgtggtctcgatggggaccctggtttctctggaccccca
ggagagaggggtcctcctggggaaccagggtttggccggccgggggagcctggagaaaag
ggtacatctggtcaacaaggccgacctggaatccctggacaaccaggagtgaaaggtgaa
ccaggtaaagatgtgagctcacctggaccccagggctcccccggacctcgaggacaatct
ggcatccctggactacaaggtgacagaggacttcagggagaccctggaatgccaggattc
cccggacagaaaggtgactcaggtgcacccggcattggattcccaggactatccgggcct
aaagggtactctggagctccaggagcccctgggttgccaggagagcctgggagatctgga
caggatggtttctctggaaaaccaggcacacctggtccaaagggtgagccaggtcgtggt
ctacctggtcctaaaggttctcagggccctcccggagagacaggtttccatggagataaa
ggcaacgttggtccaactggtattcctggacaagagggacacacaggaccacctggagct
cagggaattcaaggtgaccctggtccccctggtcagcatggtggcactggaccccctgga
acccctggagcaggagaacctggggcccctggaccaataggaccccctggagagccaggc
cccttcggtcatgacggtgtgaaaggagataagggtttccctggctctcctggtctggac
atgcccggcccccagggagagaagggagactcaggattccctggactgtctggatcaaaa
gggttgccaggaagacctggcccggctggcagagacggattccccggagacccaggcctc
aagggagagatgggagtcatgggaacgcctggaacaccaggatatcagggttctgctggg
agccctggaacttctggacagagaggcaacccgggtgtctctggacctaggggggagttt
ggtgagcctggacccaaaggagagaggggagagccgggtctgcagggtcctcctggcaac
atgagtgagctgaacatggagcccatgaagggagagaaaggagacagcggagacccaggt
gacactggacacaccggagagaagggttatccaggacaggccggagtacctggtatgcca
ggaaaggatggagagcacggtacacctggtcaaccaggtgagaaaggagacacaggtgtt
cctggtgagcccggcagtactgggtatcctggaaacaaaggaagcattggagaaatggga
tacccaggttctgtgggtccgaagggtgctaaaggcattgtgggcacaacgggtcaccca
gggttccggggtacagagggggtgaaaggagacaagggaacagccggtttgccaggtgtc
ggagtgccaggaccccctggagagaagggtcagttgggtctgaatggtttccctggtaac
gcaggagagaagggtcagaagggaggaatgggagtccccgggatgccaggaacaccagga
accaagggagacactggttacattggtcacccaggtcagccgggtcagccaggagagaag
ggtgtcggtgggctgcccgggtcaacaggagagccaggtcaaacaggtcgaccaggtgag
cctggtctgcagggtcccccaggtccgaccggagagaaaggagagtcaggagtggacggc
attcctggatcatcaggagacagaggagaccaaggttttcctggcagaggcttcccagga
acgccggggtcgtctgggtttaaaggtgataagggcagtccaggtttcccaggttcccca
ggtatcccgggtatcccagggaccaggggagagaagggtacggcaggcttccagggctcc
ctgggccagccaggagaacagggccacccaggacccgccatggaggggcccaaaggagac
caaggagtgccaggaaagcctggagaaccaggtaccagtggtgttccaggtcctgctggt
gttcccggcagcgcgggggggaagggagacaagggagatcagggtggacaaggagtacag
ggcgagcagggcttaacgggagaacgaggatactctggacttcctgggcaatctggcctt
ccaggtgttgatggactgaagggagagatgggactgcagggtgtgcctggtttcccaggg
acaaagggtgaattgggtgtgtttggattgaaaggagagctgggagacagaggattcaca
ggaactaaaggtaatgatggcccccctggtcctcctggcctccacaccttcatcaaggga
gaaagcggcttcccaggtagtcagggccctcaggggcctgtggggccctcaggtttccct
gggctgaaaggacagcaaggtatgacaggtattcagggtattaaaggtgacgaggggaac
cctgggattaatggtctccccggagccaagggagaaccaggcctgcttggtccctcagga
ccgagagggtatcccggacccccaggacctgatggtgttccgggtcaggtaggtcctccc
ggcccctcctccatggagcatggtttcctggtaaccaggcacagccaatcggtggaggtt
ccacagtgtccagagggaacatcgctgatctatgatggatactccctactctacatccag
ggcaatgagcgttcccacggacaggacctgggtacggctggtagctgtctgaggaagttc
agtcccatgcccttcctcttctgtaacatcaacaacgtctgttactttgcctcccgtaac
gactactcctattggcttacctcccctgagcccatgccaatgaatatggaccctatcacc
ggccagggcatcaggcccttcatcagcaggtgttctgtgtgtgaggctcctgccatggtg
atagcagtacacagtcagaatatcatgatcccatcatgccccaatggctgggactcactc
tggattggctactccttcgtcatgcataccagtgcaggtgctgagggctctggccaggcc
ctggcatctcctggctcctgtctagaagagttccggagcgctcccttcatcgagtgtcac
gggcgtggaacctgcaactactacgccaactcctacagcttctggctggccgccatcgag
gacgaggagatgtttaggaaacccgtgcccaccacgctaaaggcaggaagtctccggact
cacattagccgttgccaggtgtgcatgaagaggacatag
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