Salvelinus namaycush (lake trout): 120058517
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Entry
120058517 CDS
T07522
Name
(RefSeq) ATP-dependent RNA helicase DDX3X-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
120058517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120058517
03041 Spliceosome [BR:
snh03041
]
120058517
03036 Chromosome and associated proteins [BR:
snh03036
]
120058517
Enzymes [BR:
snh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120058517
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
120058517
mRNA cycle factors
Common to processing body (P body) and stress granule
120058517
Spliceosome [BR:
snh03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
120058517
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120058517
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
120058517
NCBI-ProteinID:
XP_038863157
UniProt:
A0A8U1EU61
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All DBs
Position
Sna13:38327747..38352589
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AA seq
684 aa
AA seq
DB search
MSHVVVDNPHGLDQQLAGLDLNSGGQGGGTGRRYIPPHLRNKEVSKNDSPGGWDGGRSNG
VTNGYHDNRNGGRGGPPRNDRGFGGGQDGGSWGTAPRQDAAYNSFGGRGKSSFYSDRGSS
GGRGGYQRGGCGGGNNRWQEDSRDDEDWSKPSPANERLEAELFSSGNTGINFEKYDDIPV
EATGSNCPPHIDSFHDVDMGEIIMSNIALTHYTRPTPVQKYAIPVIKSKRDLMACAQTGS
GKTAAFLVPVLSQIYTQGPGDATAASKNGQDSGKYGRRKQYPLSLVLAPTRELALQIYEE
SRKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLV
LDEADRMLDMGFEPQIRRIVEQDTMPPKGIRQTMMFSATFPKEIQMLARDFLEDYIFLAV
GRVGSTSENITQKVVWVEDGDKRSFLLDLLNATGKESLTLVFVETKKGADALEDFLYREG
YACTSIHGDRSQRDREEALNQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEY
VHRIGRTGRVGNLGLATSFFNDKNSNITKDLLDILVEAKQEVPSWLESLGYENQHKGNTG
RGRSKRFSSGGFGARDYRQTPGGGGFGGGGRGGPRTGGHGGGGGGSRGGFGGGGFGGGNS
YGGNDAGYGGNYSHSGSGTDWWGN
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcgtcgataatccacacggtctagatcagcagcttgctggcctagac
ttgaactcaggcggacagggaggaggcactggccggcgttacattccacctcacttgagg
aacaaagaggtttccaaaaacgactctccaggaggatgggatggcggacgcagcaacggt
gtcaccaacggttaccatgacaaccgcaacgggggacgcggcgggcctccccgaaatgac
agagggtttggtggtggacaagatggtggaagctggggcactgctcccagacaagatgca
gcctataacagctttggagggaggggcaaatcttccttctacagcgaccggggatcatca
gggggcagagggggttatcagcgtggagggtgtggtggtggtaacaaccgctggcaggaa
gactccagagacgacgaggactggtccaaacccagccccgctaacgaacgcctggaagcg
gagctgttctcaagcggcaacactggtattaactttgagaaatacgatgacattcctgtg
gaggccactggctccaactgcccgccacacatcgatagtttccatgatgtggacatgggg
gagatcatcatgagtaacattgccctgacccactacacgcggcccacccctgtccagaaa
tacgctatccccgtcattaagtctaagagagacctcatggcctgcgctcagactggctcg
ggtaagacggcagccttcctggtgccagtgctgagccagatctacacacaggggcctgga
gacgccacagcggcttccaagaacggacaggacagtggtaaatatgggcgccgtaagcag
tatcccctctccctggtcctggctcccaccagagaactggccctgcagatatacgaagag
tccagaaagtttgcgtaccgctcccgcgtgcgtccctgcgttgtgtacggaggggctgac
atcggtcagcagatcagagacttggagcgaggctgtcatcttctggtggccacacctgga
cgcctggtggacatgatggagaggggcaagattggcctcgactactgcaactatttggtg
ctggatgaggctgacaggatgttggacatgggctttgagccccagatcagacgcatcgtg
gagcaggacaccatgccccctaaaggcatccgtcagaccatgatgttcagcgctaccttc
cccaaggagattcagatgctggcgcgagacttcctggaggactatatcttcctggctgtg
ggccgtgtgggctccacctctgagaacatcactcagaaggtggtgtgggtggaggacggt
gacaagaggtccttcctcctggacctgctgaacgctacaggtaaggagtctctgacgttg
gtgtttgtggaaaccaagaagggagcggatgccctggaggacttcctgtaccgcgagggc
tacgcctgcaccagtatccacggagatcgctcccagagagacagagaggaggcgctgaac
cagttccgctccggacgctgccccattctggtggccaccgcggtggctgctcgtggtctg
gacatctccaacgtcaagcacgtcatcaactttgacctgcccagcgacatcgaagagtac
gtccaccgtattggtcgtaccggtcgtgtggggaacctgggtctggccacgtcgttcttc
aacgacaagaacagcaacatcaccaaagacctactggacatcctggtggaggccaagcag
gaagtcccctcctggctggagagcctgggttacgagaaccagcacaagggcaacacggga
cgcggacgctctaagaggttttcctctggtggatttggtgccagggactaccgccagacg
cccggcggcggtggctttggtggtggtggacgcggcggccctcgcaccgggggtcacgga
ggaggaggaggaggaagtcgtggcggcttcggtggaggtggctttggaggcgggaactcc
tatggtggtaacgacgctggctacggtggcaactacagccactccggtagtggaaccgac
tggtggggcaactag
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