Salvelinus namaycush (lake trout): 120058981 Help Entry 120058981         CDS       T07522                                  Name (RefSeq) collagen alpha-1(II) chain-like   KO K19719   collagen type II alpha Organism snh  Salvelinus namaycush (lake trout) Pathway snh04510   Focal adhesion snh04512   ECM-receptor interaction Brite KEGG Orthology (KO) [BR:snh00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     120058981  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     120058981  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:snh00536]     120058981 Glycosaminoglycan binding proteins [BR:snh00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    120058981 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI VWC VWC2L_2nd Motif Other DBs NCBI-GeneID:  120058981 NCBI-ProteinID:  XP_038863666 UniProt:  A0A8U1BZ46 LinkDB All DBs Position Sna14:complement(36881453..36909716) Genome browser AA seq 1489 aa AA seqDB search MFSFVDSRTVLLLVASQVVLISLVRCQEEDDQEAGSCIQDAHRYNDKDVWKPEPCRICVC DSGSVLCDEIICEEIRECANPIIQPRECCPICPADASAPTEAVFGAKGQKGAPGEIADVV GPNGPAGPMGPSGEQGPRGEAGAKGDKGNVGPRGRDGEPGTPGNPGNPGPPGPNGTPGLG GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGSPGPSGAPGPQGFQGNPGETGEPGPA GALGPQGPPGPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLD GSKGEGGAAGAKGEGGAPGENGAPGPMGPRGLPGERGRPGPSGSAGARGNDGLPGPAGPP GPVGPAGAPGFPGSPGSKGEAGPTGARGTEGAQGPRGEAGTPGSPGPAGASGNPGTDGIP GAKGSAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGELGPI GPQGGPGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVP GVGGPKGGTGDPGRAGEPGLPGARGLTGRPGDAGPQGKVGPGGASGEDGRPGPPGPQGAR GQPGVMGFPGPKGANGEPGKAGEKGLVGRQGLIGLSGKDGETGAAGPNGPAGPAGERGEQ GAAGPSGFQGLPGPAGSPGEGGKPGDAGVPGEAGAAGATGPRGERGFPGERGGAGSQGLQ GPRGLPGTPGTDGPKGAIGPTGGAGSQGPPGLQGMPGERGAGGILGAKGDRGDNGEKGPE GAPGKDGSRGLSGPIGPPGPAGPNGVKGEGGPSGPTGAAGARGAPGDRGEGGPPGPAGFA GPPGADGQPGAKGEFGEAGQKGDGGAPGPQGPSGAPGPVGPTGVSGSKGARGAQGAAGAT GFPGAAGRVGSPGPNGNPGAAGPAGPAGKDGPKGVRGDAGTPGRQGDAGLRGVAGAPGEK GDAGEDGPPGPDGPSGPHGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGATGAGGDR GPPGPVGPPGLSGPAGEPGREGNAGSDGPPGRDGSTGVKGERGNTGPAGAPGAPGAPGAP GPVGPLGKQGDRGEGGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFT GLQGLPGPPGSAGDQGAAGPAGPSGAKGPPGPVGPTGKDGSNGTPGPLGPSGPRGRSGET GPAGPPGNPGPPGPPGSPGPGIDMSAFAGLSQPEKSPDPLRYMRADEASSSLRQHDVEVD STLKSLNYQIENLRSPDGSQKNPARTCRDIKLSHPEWKSGDYWVDPNLGSTADAIKVFCN METGETCVYPSIAKVPHKNWWTSKSKDRKHVWFGETMNGGFHFSYAEDGTNAASIQLTFL RLLSTEASQNLTYHCKDSVAYMDASTGNLKKALLLQGSNDVEIRAEGNSRFTYSVVEDGC KKHTGQWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL NT seq 4470 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggattcacggactgttctgctacttgtagcatcccaagttgtttta atatcccttgtcagatgccaggaagaggatgaccaggaggcaggcagctgcatccaggat gcccatcgctataacgacaaggatgtgtggaagccggagccgtgtcgtatctgtgtgtgt gacagcgggtcagtgctgtgtgatgagatcatctgcgaggagatcagagagtgtgccaac cccatcatccaacctagagagtgctgccccatctgccctgcggacgccagcgcccccact gaggcggtgtttggtgctaagggccagaaaggggcaccaggcgagattgcagatgttgta ggaccgaatggaccagcaggccctatgggcccctcgggcgagcagggaccacgtggagaa gctggcgctaagggtgataagggaaatgttggccccagaggcagagatggcgagcctgga acccccgggaaccccggaaaccctggccctcccggacccaacggaaccccaggtcttggc gggaactttgctgctcagatggctggtggattcgatgagaaagctggaggcgcgcagatg ggagtgatgcaaggacctatgggccctatgggtccccgtggttcacctggcccttctgga gcccctggcccacaaggtttccaaggtaaccccggagagactggagagccaggccctgct ggtgcactgggaccccaaggaccccctggaccttctggcaaaccaggaagtgatggtgag gctggcaaacctggaaaggctggtgaacgtggacctgcaggacctcagggagctcgtgga ttccccggaactcctggtcttcccggaatcaaaggacacagaggtcatcctggtcttgat ggatctaagggagagggtggtgctgctggagccaagggtgagggtggcgctcccggagag aatggcgcccctggaccaatgggaccacgtggtctgcctggcgagagaggccgtcccgga ccttctggctctgctggtgcccgtggtaatgatggcttgcctggccctgctggtcctcct gggcctgttggacctgctggagcacctggtttccctggatctcctggttccaagggagaa gctggccccaccggtgcccgtggaactgaaggcgcacagggaccccgcggagaggctggc acacccggatctcccggtcccgctggcgcctctggcaaccctggtactgatggtatcccc ggagctaaaggatctgctggcgcttctggtattgctggtgcacctggtttcccaggaccc cgtggcccccccggacctcagggagcaacaggacctcttgggcccaagggccagtcggga gaccccggtattcctggtttcaaaggagaggctggacccaagggagagcttggccctatt ggtccccaaggcggccctggccccgctggcgaggagggcaaaagaggagcaagaggagag ccgggtgctgctggaccacttggacctcctggcgagagaggagctcccggtaaccgtggt ttcccgggtcaggatggtcttgctggtgctaagggagcccctggtgaccgtggtgttccc ggcgtgggtgggcctaagggaggcactggtgaccccggccgcgcaggagagcctggtctt cccggagccagaggtctcactggtcgccctggagatgctggtcctcaaggcaaagttggt cctggtggtgcttctggggaggacggtcgccccggcccacctggtcctcagggagcacgt ggccagcctggtgtgatgggattccccggaccaaagggagccaatggtgagcctggcaag gcaggagagaagggtctcgtgggtcgtcaaggtctgataggtctgtctggtaaagatggt gagactggcgctgctggacctaacggccctgctggacctgctggagagagaggagagcag ggagctgctgggccatctggcttccagggtctgcctggacctgctggctccccgggagag ggaggcaagcctggtgatgcgggtgttcctggagaggctggtgctgctggcgctacggga cccagaggcgagcgtggtttccctggtgagaggggcggtgcaggatctcagggtctgcag ggacctcgtggacttcccggaactcccggaaccgatggacccaagggagccattgggcca actggtggtgctggatctcagggaccccccggcctgcagggtatgccaggagagagagga gctggtggtatcctcggagccaaaggtgacagaggtgacaacggcgagaaaggacctgag ggcgctcctggaaaggacggttccagaggcttgtctggtcccattggtcctcctggccca gctggtcccaacggcgtgaagggtgagggtggaccttctggcccaactggtgctgctggt gcccgtggtgctcctggtgaccgtggtgagggtggtcctcctgggcctgctggcttcgct gggcctcctggtgcagatggtcagcctggagccaagggagagtttggcgaggctggacag aagggagatggtggtgcccctggacctcagggaccctctggggcccctgggcctgtgggt cccactggcgtttctggatctaaaggagcccgcggtgcccagggtgccgctggtgctact ggtttccctggtgctgctggaagagttggatctcccggtcccaacggtaaccctggtgct gctggccccgctggccctgctggtaaagacggtcctaagggagttcgcggtgacgctggc accccaggaagacagggagacgctgggctgcgtggagttgctggagcccctggcgagaag ggagatgctggagaagatggtccccctggtcctgatggtccttcaggtccccatggtctg gctgggtctcgtggtattgttggtctgcctgggcagcgtggagagagaggcttccctgga cttcctggaccttctggagagcccggtaagcagggagctactggtgctggtggtgaccgt ggaccgcctggccctgtgggaccccctggactgtctggacctgcaggagagcccggaaga gagggcaacgctggatctgatggacccccaggtagagatggatccactggggtcaagggt gagcgtggtaacactggtcctgctggtgctcctggtgccccaggcgctcccggtgccccc ggccctgtcggccccctgggcaagcagggagacagaggagagggaggtgctcaaggacct gccggacccgctggaccagctggcgctagaggaatggccggaccccaaggaccccgtgga gacaagggagaggctggcgagacaggagagaggggacagaagggacaccgcggcttcact ggtctgcagggtcttcccggacctcccggctccgctggagaccagggagctgctggacct gccggacctagtggcgctaaaggaccccctggcccagtcggtcccactggtaaggatgga tctaacggtacccctggacccctcggaccctctgggcctcgtggtcgttctggagagact ggtcctgctggtccccctggtaaccccggaccccctggtcctcctggttctcccggccct ggcatcgacatgtctgccttcgctggcctgtctcagcctgagaagtctccggatcccttg aggtacatgagggctgatgaggcgtccagctccctgaggcagcacgacgtggaggtggac tccacactcaagtccctcaactaccagatcgagaacctgcgcagccccgacggtagccag aagaaccccgcccgcacctgcagagacatcaaactgtcccaccccgagtggaagagtggt gactactgggtggatcctaaccttggcagcacagctgacgccatcaaggtcttctgcaac atggagactggcgagacctgcgtgtaccccagcatagccaaagtaccgcacaagaactgg tggacaagcaagagcaaggaccgcaaacacgtctggttcggagagaccatgaatggagga ttccacttcagctacgctgaggacggtaccaacgccgccagtatccagctgaccttcttg aggctgctgtccacggaagcgtctcagaacctcacctaccactgcaaggacagtgtggct tacatggacgcgtccacgggcaacctgaagaaggctctgctgctccagggctccaacgac gtggagatcagagctgagggcaacagccgcttcacctacagcgtggtggaggacggctgc aagaaacacacaggccagtggggcaagactgtcttcgagtacaaaacacagaagacctcc cgtctgcccatcgtggacattgctcccatggacatcggaggagcagaccaggagttcggt gtggacgtgggcgcagtctgcttcttgtaa

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