Salvelinus namaycush (lake trout): 120059071
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Entry
120059071 CDS
T07522
Name
(RefSeq) WD repeat-containing protein 82-like
KO
K14962
COMPASS component SWD2
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120059071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120059071
03036 Chromosome and associated proteins [BR:
snh03036
]
120059071
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
120059071
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
120059071
COMPASS/SET1 complex (yeast)
120059071
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_TEP1_C
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
WD40_RFWD3
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
Beta-prop_NUP159_NUP214
WD_LRWD1
KNTC1_N
Beta-prop_Nup120_160
Beta-prop_WDR35_TULP_N
VPS8_N
Motif
Other DBs
NCBI-GeneID:
120059071
NCBI-ProteinID:
XP_038863789
UniProt:
A0A8U1C7G9
LinkDB
All DBs
Position
Sna2:complement(11810758..11816578)
Genome browser
AA seq
313 aa
AA seq
DB search
MKLTDNVLRSFRVAKVFRENSDKINCFDFSSNGETIISSSDDDSLVLYDCQEGKPKRTLY
SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHNKRVTALSMSPVDD
TFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFD
KGPFATFKLQYDRTCEWTGLKFSNDGKLILVSTNGGALRLLDAFKGAVMHSFGGYNNSKA
VTLEASFTPDSQFIMIGSEDGKIHMWNAESGMKVAVLDGKHTGPVTCLQFNPKFMTFSSA
CSNMAFWLPTIDD
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgaagcttacggacaatgtgctgcggagcttcagggttgcaaaggttttccgagaaaat
tcagacaaaatcaactgttttgatttcagctcaaacggcgaaaccattatttctagcagc
gacgatgactccctggttttatacgattgccaagagggaaaacccaagcggaccctctac
agtaagaagtatggagtggatctgatcaggtacacacatgcagccaacaccgtggtctac
agctccaacaaaattgatgacactattcggtacctctccctccatgacaacaagtacatc
cggtacttccccggacacaacaaaagagtgacggctctctccatgtcccctgtggatgac
acgtttatctcaggatctttagacaagacaatccggctatgggacctgcggtctccgaac
tgccagggcctgatgcacctccaggggaagccagtttgctcctttgatcctgagggtctg
atttttgctgctggtgtgaactccgagatggtcaaattgtacgacctgcgatcctttgac
aagggtccttttgctaccttcaagctacagtacgaccgtacctgtgagtggacaggactc
aagtttagcaatgatgggaagctcatccttgtctcaaccaatgggggtgctctccgcctc
ctcgatgccttcaagggcgctgtgatgcattcctttgggggctacaacaatagtaaagct
gtgacgctggaggcctccttcactcctgactctcagtttattatgatcggctctgaggat
gggaagatccacatgtggaatgcagagagtgggatgaaggtggctgttctggatgggaag
cacacgggtcccgtcacctgccttcagttcaaccccaaattcatgactttttctagtgcc
tgttcaaacatggcattctggctccccactattgatgattga
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integrated database retrieval system
