Salvelinus namaycush (lake trout): 120059320
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Entry
120059320 CDS
T07522
Symbol
exosc10
Name
(RefSeq) exosome component 10
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120059320 (exosc10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120059320 (exosc10)
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
120059320 (exosc10)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
120059320
NCBI-ProteinID:
XP_038864213
UniProt:
A0A8U1BX79
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Position
Sna14:complement(25235249..25247917)
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AA seq
884 aa
AA seq
DB search
MDSSNSNKQNNNQSLNEDQAGVDNEFCPGFKDVDAFVKYGLGTVVAATKASASLPQVGDE
YDLYRSFPGFQEFCETQGDGLLHCMSQIMHHHGCRAHMRDRNKLTGLEERFDLVVDSNDV
ILEKVGILLDDAAGVNRSQQPVMPAGFQPPKIVVSSWNRKGGDSGSGRSSETFRLLQARN
VTRPQLKFREKVDNSNTPFTPKIFVKPNAIKPLPSYFTNKHIRKERPEDLDVPAALADFI
HQQRTQEHVEDMFAHPYQYELDHLALPENLLSKPELQMYKPLAETKCSFIDNLEDLVAVN
EKLAKTSEFAVDLEHHSYRSFLGITCLMQISTRDEDFIIDTLVLRSELYILNEAFTDPAI
VKVFHGADSDIEWLQKDLGLYIVNMFDTHQASRTLNLGRHSLDHLLKLFCNVDSDKRYQL
ADWRIRPLPDEMFQYARADTHYLLYVYDRLRVDLWEVGNGQPALLQMVWHKSKDISLKKY
MKPLFTENSYMDLLRKQKKAFNTQQLTAFRLLYGWRDKLARQEDESTGYVLPNHMMIKIS
DILPKEPQGIIACCNPVPPLVRQQVNELHLLVQQAREMPLLKAEIVAEKKKALTPIKPEI
PLFGPHDTSRVSESDFPSFTPNELSTKKGALFSDEEQGEEVDMHKMMGLVVSAKITLFEE
DTVKYPGHLTVAQQKACRVVESFQNPFRMYLPSNDIHISKNAKFDPSTKIYEISNRWKLQ
SMEQQQKEVEAKKKAKEEAKAAAEERKKAKQSYQESLQNVATVRQQASESIKPGGKKRER
VASETGESTPKPNKKLMKAAEKKNEDSTPPLVFKPYDYSQSDFKVFAGAKGNDGKQFDPD
RQGHEPRKKKNAKAQKSNACAGNRSMSFFGGKSERGVRRNWPKR
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atggattcttcaaacagtaacaaacaaaataataatcaatctcttaacgaagaccaagct
ggtgtggacaacgagttttgtcccgggttcaaggatgtggatgcatttgtgaagtatgga
cttggcactgtcgtagcagctaccaaggcatctgccagtctaccgcaagtaggggatgaa
tatgacttatatcgcagcttccccggatttcaagaattctgtgaaactcaaggagatgga
ctgttgcattgtatgagtcagataatgcaccaccatggctgcagagctcacatgagagac
cgcaacaaactgacggggttggaggaaagatttgacttggtggttgactccaatgatgta
attcttgagaaagtgggtattctgcttgatgatgctgccggagtcaacaggagccagcaa
cctgtcatgcccgcaggttttcagccccctaagatcgtcgtatccagttggaatcgtaag
gggggtgactctggttctggacgtagttcagagacattccgactcctccaagccagaaac
gtcaccagacctcagttgaaattccgggaaaaagttgacaatagcaacacaccgtttact
cccaagatcttcgtcaagcccaatgcaataaaaccacttccttcatattttaccaacaaa
cacattcgcaaagagagaccagaggatttggatgtccctgccgccctggctgatttcatt
caccagcagagaactcaggagcatgtagaagacatgttcgctcacccataccaatacgaa
ctggatcaccttgcgttacccgagaatcttctgtccaagcctgaactccagatgtacaaa
ccacttgctgagacaaagtgctcattcattgacaatctggaggatctggtggcagtaaac
gagaaactggccaagacgtcggagtttgcagtagatctggagcaccactcctacagaagt
tttttgggcatcacctgcctgatgcagatttcaacacgggatgaagacttcattatagac
accttggtgctgcgtagtgagctgtacatactcaatgaggctttcacagatcccgccatc
gtcaaggttttccatggtgccgattctgatattgagtggctgcaaaaggatttaggcctt
tacattgtcaacatgtttgacacccaccaggcatcacgtacccttaacctgggcaggcac
tcgcttgaccacttgcttaagctgttctgcaacgtggactctgacaaacgctaccaactg
gcagactggagaatacggcctttgccagatgagatgtttcagtatgcccgggcagatacc
cactacctcctctatgtctacgatcggctgagggtggacctgtgggaagtgggcaacggg
cagcctgccctgctgcagatggtctggcacaaaagcaaagacatctcattgaagaaatac
atgaagccactcttcactgagaactcctacatggacctgctgaggaagcagaagaaggcg
ttcaacacgcagcagctaactgccttccgactgctgtacggctggagggacaagctggcc
agacaggaggatgagagcactggatatgtcctgcccaatcatatgatgattaagatctct
gacatcctgcccaaagagcctcagggcatcattgcttgctgtaaccctgtccccccattg
gtgcggcagcaggtcaacgagctccacctattggtgcagcaggccagggagatgcccctt
ctcaaggctgaaattgtggctgagaagaagaaagcactcacgcccataaagccagaaatt
cctctttttggtcctcatgatacatccagagtctctgaaagtgatttccccagctttacc
ccaaatgaactctcaaccaaaaagggggcactcttttctgacgaggagcagggagaggag
gttgacatgcataaaatgatgggtctagtggtttcagcgaaaatcacattgtttgaggag
gacacagtcaaataccctggtcacctcacagtggctcaacagaaagcatgcagggttgtc
gagtcttttcagaaccctttccgaatgtatctaccgtcaaacgacatccatatctccaaa
aatgctaagttcgacccctctacgaaaatatatgagatcagtaatagatggaagctgcag
agtatggaacagcagcagaaggaggtagaggccaaaaagaaagcgaaggaagaggcaaag
gcagcagcagaggaaaggaagaaggccaagcagagctaccaggaatcacttcagaatgtt
gcgactgtgcgtcagcaagcttcagaatctataaaaccaggaggaaagaaaagggagagg
gttgccagtgagacaggagagtcgaccccaaaacctaacaagaaactaatgaaagctgct
gagaagaaaaacgaggactctacaccacctctggttttcaaaccgtatgactacagccag
tcagatttcaaggtctttgctggggccaaaggaaatgatggtaaacagtttgatccagac
agacaaggccatgaacccaggaaaaagaaaaatgcaaaagcacaaaaatcgaacgcctgt
gctggaaaccgaagtatgtccttttttggtggaaaatccgaaagaggagtccgtcgtaat
tggcctaaaagatag
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