Salvelinus namaycush (lake trout): 120059564
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Entry
120059564 CDS
T07522
Symbol
hcfc1b
Name
(RefSeq) host cell factor 1b
KO
K14966
host cell factor 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03083
Polycomb repressive complex
snh04980
Cobalamin transport and metabolism
snh05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
120059564 (hcfc1b)
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
120059564 (hcfc1b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
120059564 (hcfc1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
snh01009
]
120059564 (hcfc1b)
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
snh03036
]
120059564 (hcfc1b)
03029 Mitochondrial biogenesis [BR:
snh03029
]
120059564 (hcfc1b)
Protein phosphatases and associated proteins [BR:
snh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120059564 (hcfc1b)
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
120059564 (hcfc1b)
HMT complexes
COMPASS/SET1 complex
120059564 (hcfc1b)
MLL-HCF complex
120059564 (hcfc1b)
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
120059564 (hcfc1b)
Mitochondrial biogenesis [BR:
snh03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
120059564 (hcfc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_3
Kelch_5
Kelch_4
Kelch_1
Kelch_6
fn3
Motif
Other DBs
NCBI-GeneID:
120059564
NCBI-ProteinID:
XP_038864625
UniProt:
A0A8U1BVY3
LinkDB
All DBs
Position
Sna14:4841816..4902312
Genome browser
AA seq
1754 aa
AA seq
DB search
MASGTSGSVLQPRWKRVLGWSGPVPRPRHGHRAVAIKELMVVFGGGNEGIVDELHVYNTA
TNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWEWKRLKP
KSPKNGPPPCPRLGHSFSLVGNKCFLFGGLANDSEDPKNNIPRYLNDLYTLELRAGSSVV
GWDIPITYGVLPPPRESHTAVVYTEKTSSKSRLVIYGGMSGCRLGDLWTLDIDTLTWNKP
SINGTAPLPRSLHSATTITNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNLDSMA
WESVLMDSLEDNIPRARAGHCSVAINSRLYVWSGRDGYRKAWNNQVCCKDLWYLETEKPR
PPSRVQLVRANTSSLEVSWGAVPTADTYLLQLQKYDIPPASATTTPGVSPATSLPVNSPK
SPVTASAASAQVQPLQGITLVPSPTTTMPGSPLAAANARGPAILKVSAPHATTGTSIVTV
RQANQGGKSPVTVTSLPAGVRMVVPAQGVQGTVKDLLWSIFHLYLDLPTPNPEPPLSAFL
FNQTKGPLPAGTILKLVTSADGKPTTIITTSQAGTAGGKPTILSYSGMPTATKPGTHIIK
TIPMSAIGQAGVTGSGMKSPITIITTKMMTPGTGTPGKIISAMPRAGPGQQGLTQVVLKG
APGQPGTILRTVPMGGVRLVSPVTVSGVKPNVTTLVVKGTTGVTTFGTVTGTVSSSLAGG
SVATATPITTLGTMTALPGQVTVSAAQAGAQPTQVTLITTPSGVDAQPVHDLPVSILSSP
TSAEPSSTQPEAGDPGTVTLVCSNPPCETHETGTTNTATTASANMTGNGGVERVCSNPPC
ETHETGTTNTQTTASSNMGQVQQVCTNPPSETHDTGTTNTQTTASSNMGQVQQVCTNPPS
ETHDTGTTNTQTTASCNMGSNQQQQQGSCVIDNTSGSDPPSSPPPSSGALSPSSVSGTSS
VPGVLRPETLRTGTTYTSTTARSNMGSDKMGMTLSSSSSDNQSKSSGGGGGGSPLTSPVC
SSPPCETHQTSPTEAGAGGSSDTQVCSNPPCETHETGTTTTSTQADSSMGNGQTTGTVQR
VCSNPPCETHETGTTNTPSQTTSNLAGTGTGTVQRVCSNPPCETHETGTTNTATTAQPGD
STQGDNGTTEAPSSSSVTTESSAVVASGRAVTTVTQSTPTPGPSVPEISSMSGSSEAMVA
ACIEGEEAMQTDCLPEGTVRVVTLEEAAAAGIQVHVEGMEEQNQGEQEGLPAELMSEGGS
GGQQTLMVTGLTPEELAVTAAAEEAAQHAAAEEANAQAMAIQAVLQAAQHAVMNEGDSGQ
EGQHQNIPIVLTQAELAALVQQQQQLQEAQALAQAAAAAAAAQHNQPTEGLAPADSLNDP
ASESNGQELAAAVTQAVARLAPTCTMVVTNPAKTQPMMVAIPAKTQPMMVAIPAKTQPMM
VASPAKTQPMMVASPTKTQPMMVASPAKTQPMMVASTAKTQTMMVASPAKMQAAATLAEV
ANGIESAAGRQGAPPAVAKAPVKKDNQWFDVGIVKVTNTVVTHYYLPTDDQATVDDDSGA
IPDYSQMKKMDLQPGTAYKFRVAGINTCGRGNFSEVSAFKTCLPGFPGAPCAIKISKSPD
GAHLTWEPPSVTSGKIIEYSVYLAIQSAQSGEQAKPTTTTTPAQLAFMRVFCGPNPSCLV
QSSSLSNAHIDYTTKPAIIFRIAARNEKGYGPATQVRWLQEVGKDGVAAKPTAKRPGSSP
DMKAAGPKKARSDQ
NT seq
5265 nt
NT seq
+upstream
nt +downstream
nt
atggcatctgggacctctggctcagttctgcagccccggtggaagcgggtgttgggttgg
tccggccctgtccctcggccccgacacggacatcgtgcagttgcaatcaaagaattgatg
gtcgttttcgggggaggaaatgaaggaattgtggatgaactgcacgtgtataacacagca
accaatcagtggttcattcctgctgtccgtggcgacatcccgcctggctgtgctgcgtat
gggttcgtgtgcgacggtaccaggctgctggtgtttggagggatggtggaatatggcaaa
tacagcaacgatctgtatgaactgcaggccagtcgctgggagtggaagcgtctgaaaccc
aagtctcctaagaacggccctcctccctgtccccgcctgggacacagcttctccctggta
gggaacaaatgcttcctgttcggaggactggctaacgacagtgaggaccccaagaacaac
atccccagatacctgaatgatctgtatacgttggagctgcgtgccggctccagtgtagta
ggctgggacatccccatcacctacggggtgttgcccccacccagagagagtcacactgcc
gtggtctacacagagaagacctctagcaagtcccgtctggtcatctatgggggtatgagc
ggctgtcgactgggggatttgtggaccctagatatagacaccctgacatggaataaaccg
tcgatcaacgggacagctcctcttccccgcagtctccactctgccacaaccatcaccaac
aagatgtacgttttcggaggctgggttcccctggtgatggatgacgtcaaagtagcgaca
cacgaaaaggagtggaagtgcaccaacacactggcctgtctcaacctagactcgatggcg
tgggagtcggtgctgatggattctctagaagataacatccccagggccagggccggtcac
tgctccgtggccatcaactcacgcctctacgtctggagcggccgggacggataccgcaag
gcctggaacaaccaggtgtgctgtaaggacctctggtacctggagacagagaagccccgc
cccccgtcacgggtgcagcttgtgagagccaataccagtagcctggaggtgagctggggg
gcggtacctaccgcagacacctacctgttgcagctgcagaagtacgatatcccccccgcc
tcagccaccaccacacccggtgtcagccccgcgacgtcactaccggtcaactcccccaag
agccctgtcacagcctccgcagcgtccgcacaggtccagcctctccagggcataacgctg
gtcccctcccccaccaccaccatgcctgggagtccactggctgctgcgaatgcacgcggg
ccagctatcctgaaggtgtctgctccccacgccaccacaggcacctccatcgtcacggtg
agacaggccaaccagggcgggaaatctcccgtaacggtgacatcacttcctgccggggtc
cgcatggtggtgccggcccagggtgtacagggaacggtaaaggacttactgtggtctatc
ttccacctctatcttgacctcccgacccctaaccctgaaccccctctatcggccttcctt
ttcaaccagactaaaggtcccctcccggcgggcaccatcctgaagctggtgacatcagcg
gacggaaagcccaccacgatcatcactacgtcccaggctgggaccgcggggggaaagccc
accatcttatcttacagcggcatgcccaccgccaccaagcctggcacgcacatcatcaag
accatacccatgtctgccatcggacaagcgggagtgacaggaagtggtatgaagtcaccc
attaccattatcaccactaagatgatgacaccaggcaccgggacaccaggcaagatcatc
agcgctatgcccagagctgggcctggtcagcagggactcacacaggtggtactgaagggt
gcccctggacaacccgggactattttacggacagtccccatgggaggagtacgtctcgtc
tccccggttaccgtttccggtgtcaaacctaacgtcaccaccctcgttgtcaagggaacc
acaggtgtgacaacgtttggtacggtgactggtacggtgtcttcgagcctggcgggtgga
agcgttgccacggctactcccatcaccaccttgggcaccatgaccgctctgcctggacag
gtcaccgtctccgcagctcaggcgggagctcagcccactcaggtgaccctaatcacgacc
cccagtggtgtggatgctcagcctgtccacgacctcccggtctccatcctgtcctccccc
acctccgccgaaccctcgtccacccagcccgaggcaggcgacccaggaacggtaaccctg
gtctgctcaaacccaccctgcgagacccacgagactggcaccaccaatacagcgaccaca
gcctccgctaacatgactggtaatggtggggtggagcgggtgtgttcaaacccgccgtgt
gaaacccacgaaaccggcaccaccaatactcaaacgacggcgtcctccaacatgggccag
gtacagcaggtgtgcaccaacccgccgtcagagacccacgatacaggtaccaccaacacc
cagacgacggcgtcctccaacatgggccaggtacagcaggtgtgcaccaacccgccgtca
gagacccacgatacaggtaccaccaacacccagacgaccgccagctgtaacatgggatcc
aaccagcaacaacaacagggctcctgcgtaatcgacaacaccagcgggtctgatcccccg
tcctctccgcccccctcctccggagccctctccccgtcgtctgtctctggtaccagctct
gtgcccggggtgctacgaccggagactctgagaacagggaccacttacacctcgaccacc
gcacgctctaacatgggctctgacaagatgggcatgacgctcagctcctcgtcctcagat
aaccagagcaagtcatccggtggtggtggaggaggatcccccctcacctctcctgtctgc
tccagtccaccttgtgaaacacaccagacaagccccactgaggccggagctggaggcagc
agcgacacacaggtctgctccaatccaccttgtgaaacacacgagactggcactaccact
acgtcgacgcaggccgactccagtatgggcaacgggcagactacagggacagtgcagagg
gtgtgttccaacccgccgtgtgaaacgcacgaaacgggcaccaccaacaccccgtctcag
actacgtccaacctggcggggacggggacaggcacggtccagagggtgtgttccaatccg
ccgtgtgaaacgcacgagactggcaccaccaacacggctacgacagcccagcctggtgac
tcgacacagggagacaacggaactacagaggctccctcgtcgtcctcggtaaccacagag
tccagcgccgtggtggcgtctggtcgagcagttaccacggttacccagtccacacccaca
cctggaccctccgtacctgagatctcgtcgatgtctgggtcgtctgaggcgatggtagcg
gcatgtatagagggagaggaggccatgcagaccgactgtctcccagagggcacagtaagg
gtcgtgaccctggaggaggctgctgcagctgggatacaggtccatgtggagggcatggag
gaacagaaccagggggagcaggagggccttcctgcggagctgatgtctgaaggtggctcg
ggggggcagcagaccctgatggtgacgggtttaacccccgaggagctggctgttaccgct
gcagccgaggaggcggcacaacacgctgctgccgaggaggctaacgcccaggccatggcc
atacaggctgtcctgcaggcggcacagcacgctgtcatgaatgaaggagacagtggccag
gagggccagcatcaaaacatccccattgtgttgactcaggctgagctggcagccctggta
caacaacaacaacagctacaggaagcccaggccctggcgcaggcggcggcggcagcagca
gcggcacaacacaaccagcccaccgagggcctggccccagcagacagcctgaacgaccca
gcgtcagagagtaacggccaggagctggctgcagcagtgacccaggctgtggcccggcta
gccccaacctgcaccatggtggtgacaaacccagctaagactcagcccatgatggtggct
atcccggctaagactcagcccatgatggtggctatcccggctaagactcagcccatgatg
gtggccagcccggctaagactcagcccatgatggtggccagcccgactaagactcagccc
atgatggtggccagcccggctaagactcagcccatgatggtggccagcacggctaagact
cagaccatgatggtggccagtccggctaagatgcaggcagctgcgaccctggcagaggtg
gctaacggcatagagtcagctgcagggaggcaaggagctcctcctgcggtggccaaagcc
ccggtgaagaaagacaaccagtggtttgacgttggcatcgtcaaggtgaccaacaccgtg
gtcacacactactacttgcccactgacgaccaagccactgtcgatgatgactccggggcg
atcccagactacagtcaaatgaagaagatggatctccagccagggacggcctataaattc
agagtggccgggatcaacacatgtggccgggggaacttctcagaggtctcagccttcaag
acgtgtctaccaggcttccccggagctccctgtgctatcaagatcagcaagagcccagac
ggcgcccacctgacctgggagcccccgtcggtcacatctggtaagatcattgagtactcg
gtgtacctggccatccagagcgcccagagcggggagcaggccaagcccaccaccaccacc
accccagcccagctggcttttatgcgggtgttctgtgggcctaacccctcctgcctggtg
cagtcgtccagcctctccaacgcacacatagactacactaccaagcctgccatcatcttc
cgcatcgcagcccgcaacgagaagggctacggccctgccacgcaggtcaggtggctccaa
gaggtaggtaaagatggcgttgcagctaaacctactgctaagagaccaggctcctcgcct
gacatgaaagctgctggtccaaagaaggccagatcagaccagtaa
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