Salvelinus namaycush (lake trout): 120060046
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Entry
120060046 CDS
T07522
Name
(RefSeq) neuronal PAS domain-containing protein 3
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120060046
Transcription factors [BR:
snh03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
120060046
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Gene cluster
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS
PAS_11
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
120060046
NCBI-ProteinID:
XP_038865036
UniProt:
A0A8U1GY48
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All DBs
Position
Sna15:32387953..32587326
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AA seq
982 aa
AA seq
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MAVGEKDGHFFPEQGRAGRQRPRFPQHTCLFSFTKLSEVAGLVSSINTVSSRVYIHVHSA
SSYKKQLQALRKEKSRDAARSRRGKENFEFYELAKMLPLPGAITSQLDKASIIRLTISYL
KMRDFANQGDPPWNLRIEGPPPNTSVKAIGVQRRRTPSAVASEIFEPHLGSHILQSLDGF
VFALNKEGRFLYISETVSIYLGLSQVELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLL
SQGTATEDGASSASSSSHAETPEPVESTSPSLLSPDNTLERSFFIRMKSTLTKRGVHIKS
SGYKVIHVTGRLRIRMALTHSRSVPIQIMGMVVVAHALPPPTINEVRIDCQMFVTRVNMD
LNIVYCENRISDYMDLTPLDIVGKRCYQFIHAEDVEGIRHSHLDLINKGQCVTKYYRWIQ
KNGGYIWIQSSATIAINAKNANEKNIIWVNYVLSNPEYKDTPMDIAQLPNLPEKASESSE
TSDSESESKENSEDNENSKSDGKGNQTENSEDPETDSKKQQQGQSSSEQEMRRQEEGDSS
SNPESQESEDDLEPSDCELETKESRLGRLGGLHIKVEHYGDRDGRVELHNSPSSSEEEED
DDDDEDDDDDDDSIKDCDRATEMLAAPAASKQQKRKKRRKKQKWDGSRSRRLRLSSATTS
PGIMNHPTLGGDAALLLPPSPASASVLKIKTEMSEPINFDNDSSIWNYPPNREISRNESP
YSMTKHVPTHDTFPSPQPGSLQVSIPDSVLTPPGTEGGGGGGGTRKGVPPSFNGNSSAPS
SASSVASLAPPSSSGSSSDPLSPPLSASPRDKQQGQGTPTASNSSSSLLYTSDLEALQRL
QAGNVVLPLVHRVTGTLATTSTAASRVYTTGTIRYAPADVTLAMQAGANLLPNNVAHAMN
FVDVNGSPGFGIDPKTPMEMLYHHVHRLNMAGPFGGAVSGASLTQMPATNVFTTAEGLFS
TLPFPVYSNGIHTTQTLERKED
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgggtgagaaggatggccacttcttccccgagcagggccgagcagggcggcag
cggcccaggttcccccagcacacctgtctcttctcgtttaccaagctctctgaggtggct
ggccttgtttcctccataaatactgtctcctcccgtgtctatattcatgtccattctgca
tcatcctacaagaaacagttgcaggctctgaggaaggagaagtcccgggatgcggctcgc
tcgcggcgggggaaggagaactttgagttctatgagctggccaagatgctgcccctgccc
ggggccatcaccagccagctggacaaggcttccatcatccgcctcaccatcagctacctg
aagatgagggacttcgccaaccagggggacccgccatggaacctgcgcatagaaggccca
ccacccaacacctccgtcaaagctataggagtacagcgaaggaggactcccagtgcagta
gcctcagagatcttcgagccacacctcgggagccacatattgcagtccctggatggattt
gtatttgcactaaacaaggagggaaggtttttgtacatctctgagacggtgtccatatac
ctgggactttcacaggtggagctgacaggcagcagtgtgtttgactacgtccaccctggc
gaccacgttgagatggcagagcagctgggcatgaagctgcctccaggccgaggcctcctc
tctcagggcactgccacagaggacggcgccagctctgcctcctcctcctcacacgcagag
acccccgagccagttgagtccaccagccccagcctgctttccccagacaacactctagag
cgctccttcttcatccgtatgaagtccacactgaccaagagaggtgtccacatcaagtct
tcaggctataaggtgatccatgttacaggcaggctgagaatccggatggcattgacccac
agtcggtcggtacccattcagatcatgggcatggtggtggtagcccacgccctcccccct
cccaccatcaacgaggtgcgcatagactgccaaatgtttgtcacccgggtcaacatggac
ctcaacattgtctactgcgagaatagaattagcgactacatggacctgacgccattggac
atcgtagggaagaggtgttaccagttcattcatgcggaggacgtggagggcatccgacac
agccatttagacttgataaacaagggacagtgtgtgaccaagtactaccgctggatccag
aagaacggtgggtacatctggatccagtccagtgccaccatcgccatcaatgccaagaac
gccaatgaaaagaacataatctgggtcaactacgtactcagtaatccagagtacaaggac
acgcccatggacatcgcccagctgcccaaccttccagagaaagcctctgagtcttcagag
acttccgactccgagtccgagtccaaagagaactctgaagacaacgagaactcgaagtcg
gacgggaaggggaaccagactgagaacagtgaggacccggagacagacagtaaaaagcag
cagcagggccagtcgtcctcagagcaggagatgaggcgtcaggaggagggagacagctcc
tccaacccagagagccaggagagcgaggatgacctggagcccagcgactgcgagctggag
accaaggagagcaggctaggccgactggggggcctgcacatcaaggtggagcactacgga
gatagagatggaagagtggagctgcacaactcgccgtcctcctctgaagaagaggaagat
gatgacgatgatgaggacgatgatgatgatgacgacagcattaaagactgtgacagggcc
actgagatgctcgccgcccccgccgccagcaagcagcagaagcgtaagaagaggaggaaa
aagcagaagtgggacggtagtcgttctagacgcctgcgcctctcctctgccaccaccagc
cctggcatcatgaaccaccccaccctggggggggacgccgccctcctgctgcccccctcc
cctgccagtgcatccgtgctcaagatcaaaacagaaatgtccgagcccatcaacttcgac
aacgacagcagcatctggaactaccctcccaacagggagatctccaggaatgagtccccc
tacagcatgacgaagcacgtcccaacccacgacacctttccctccccacagcctggcagt
ctgcaggtctccatcccagactcagtgctcactcccccaggaacagagggaggcggcggg
ggtggaggaaccaggaagggcgtacctccctccttcaacggtaacagcagcgccccctcc
tcggcctccagcgtggccagcctggcccctccctccagctctggctcctcctccgacccc
ctgtccccacccctctcagcctcgccgcgcgacaagcagcagggtcagggcacccccacc
gcctccaactcctcctcctccctgctgtacaccagcgacctggaggccctgcagaggttg
caggctgggaacgtggtgcttcctctggtccaccgggtcaccggcaccctcgccacgacc
agcactgccgcctcccgggtgtacaccactggcaccatccgctatgcccccgccgacgtc
accttggccatgcaggcaggcgccaacctgttgcccaacaacgttgcccatgctatgaac
tttgtggatgtcaacggtagccccggcttcggcatcgaccccaagacgcccatggagatg
ctgtatcatcacgtccaccggcttaacatggctggcccctttggcggtgccgtgtccggc
gccagcctcacccagatgccagcaaccaatgtattcaccacggcagagggactattctct
actcttccattccctgtctacagtaacgggatacacaccacacaaactctggagcgcaaa
gaagattaa
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