Salvelinus namaycush (lake trout): 120060113
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Entry
120060113 CDS
T07522
Symbol
srsf5a
Name
(RefSeq) serine and arginine rich splicing factor 5a
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03040
Spliceosome
snh05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120060113 (srsf5a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
120060113 (srsf5a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
snh03041
]
120060113 (srsf5a)
Spliceosome [BR:
snh03041
]
Common components
Common spliceosomal components
SR proteins
120060113 (srsf5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_5
RRM_occluded
Nup35_RRM_2
OB_RNB
Macoilin
Motif
Other DBs
NCBI-GeneID:
120060113
NCBI-ProteinID:
XP_038865127
UniProt:
A0A8U1GZA3
LinkDB
All DBs
Position
Sna15:complement(3366326..3371694)
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AA seq
308 aa
AA seq
DB search
MSGCRVFIGRLSPHARERDVEKFFKGYGRIREVNLKNGFGFVEFDDHRDADDAVYELNGK
ELCSERVTIEHARSRRGRGGGPGMGGGGGGGGSGRFSPRFSSYRQGSGGHSGGSSRYGPP
VRTEHRIIVENLSSRISWQDLKDLMRKAGEVTFVDAHRTNKNEGVVEFASHSDMKNAIDK
LDGTDLNGRKLKLSEDRKSRHSRSRSRGSRSYSRSRSRSPRSKSRSRSHNRSRSPRSRSA
SRTPEKKPSSGVGGRAAHRSQSRSRSPAPRSRTPPPRSRSRTPPPVSPVPARKQSPSRSR
SPSVESQH
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgagtggatgtcgtgtgtttatcggtcgtttgagcccccacgcccgtgagagggacgtg
gagaaattcttcaagggatatggacggatccgagaagtaaatttgaagaacggattcggc
tttgtggagtttgatgaccacagagatgcggatgatgccgtatacgagctgaatggcaag
gaactctgtagtgaaagggtgacgatagagcatgcccgctccagaagagggaggggtggt
ggaccagggatggggggtggtggcggtggtggaggaagcggacgcttctcacctcgtttc
agcagctaccgccagggttctggtggtcatagtggtggctccagtaggtatggtcccccg
gtgcgaacagagcaccgaatcatcgtggaaaacctgtcgtcacgaatcagttggcaggac
ctgaaagacctgatgaggaaagctggagaagtcacctttgtggatgcacacagaaccaac
aagaatgaaggggtggtggagttcgcatcacacagtgatatgaagaacgccattgataag
ctggacggaacagacttgaatggacgcaagttgaaactgtctgaggatcgcaagagccgc
cacagcaggagtcgttcccgtggctctcgtagctactcccggtcccgtagccgttccccc
cgctccaagtcccgtagcaggagtcataaccgctccaggagcccccgatctcgctcggcc
agccgtaccccggagaagaagccttcctctggggtagggggcagggctgcacatcgctcc
cagtcccgttccagatcccctgcccctcgctcccgtacccctcccccacgctcccgttct
cgcacgcctcctcccgtttcccctgtcccggcccggaagcagtctccgtcccggtctcgc
tccccctcggttgagagccagcactga
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