Salvelinus namaycush (lake trout): 120060194
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Entry
120060194 CDS
T07522
Name
(RefSeq) homeobox-containing protein 1-like isoform X1
KO
K24885
homeobox-containing protein 1
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120060194
Transcription factors [BR:
snh03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
120060194
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
AbiJ_NTD3
HTH_31
HTH_24
CUT
Motif
Other DBs
NCBI-GeneID:
120060194
NCBI-ProteinID:
XP_038865259
UniProt:
A0A8U1GVM4
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Position
Sna15:complement(12211997..12235494)
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AA seq
545 aa
AA seq
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MSRYTDEPRFTIEQIDLLQRLRRTGMTKPELLHALDILDRLDHQHGHKFGRRPQPAYQGP
TPNYNTNTTSSSASSSTSTTATQTGYLGNGSGSGGSGLSPSPSNNYDMSPPPPAVVSAPV
AMAVVAQNGRGGGGDELVAMTNGKLSLPRFPDSVGAVSGGVTGSGYGFEASEEELDVDDK
VEQLLRRDSAIIKEEIKAFLGNRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRAF
YRWYQLEKTTPGATLMMRPAPMALEDVLELRQTPPPISSTPGSFRLRRGSRFTWRKECLS
VMESYFNENQYPDEARREEVANACNAVIQKPGKKLSDLEKVTSLKVYNWFANRRKEIKRR
ANIEAAILESHGIEVQSPGGHSNSDEIDGNDFSDQGCEVPLFEKRAVTRPFSLSRRDLSS
PTQVPTLLPSWLAAWPGSGRGGLAAQRASSLICRSLLSGAGLAQGAVTEGSRLTGVSWSA
PSPPSLQDDSSTNHSNALEHQDPITLAVEMAAVNHSILALATQAGGGLALGGTGSDIKTE
VVEPN
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggtataccgacgagcctcgtttcaccattgagcagattgacctgctccagcgg
ctgaggaggactgggatgaccaagccagagctcctccacgccctcgacatcctggacaga
ctggatcaccagcacggacacaagttcggacgccgtccccagcccgcctatcagggaccg
acgcccaattacaacactaatacaacatcttcttcggcgtcctcatcaacatccacgacc
gccacacagactggttacctggggaatgggagtggaagtggcgggagtggcctgtcgccg
tcacctagcaacaactatgatatgtcaccgccccctccggcggttgtatccgccccggtt
gctatggcagtggtggcgcagaatgggcgtgggggtggtggcgatgagctggttgccatg
acgaacgggaagttgtctctaccacggtttcctgacagtgtaggcgcggtgagtggcggc
gtgacggggagcggctacgggtttgaggccagcgaggaggaactagacgtggacgacaaa
gtggagcaactcctgagaagggacagtgccataatcaaggaggagatcaaggcattcctg
gggaacaggcgcatctctcaggctgtggtggctcaggtcacaggtatcagtcagagtcgt
atctcccactggctgctgcagcagggctcggaccttagcgaacagaagaagagggccttc
taccgctggtaccagctggagaagaccacccctggtgcaactctgatgatgcgacccgcc
cccatggctctggaggacgtgttggagttgcggcagactccgccccctataagctccacc
cccgggagcttccgtctgcgcagaggcagtcgctttacctggaggaaagaatgtctgtct
gtgatggagagttacttcaatgagaaccagtaccccgatgaagctagaagagaggaggtc
gctaacgcctgcaacgctgtcatccagaaaccagggaagaagctgtctgatctggagaag
gtcacgtctctgaaggtctacaactggttcgccaaccgccgcaaagagatcaagagacgt
gccaacatagaagcagcaatccttgagagccatgggatcgaagtccagagccctggagga
cactccaacagcgatgaaatcgacgggaatgacttctctgaccagggctgtgaggttcct
ctgtttgagaagagagctgtgaccagacctttcagtctcagtcgacgagacctgtcctct
cccacacaggtgcccaccctgctgccaagctggctggcggcttggcccggctcgggcagg
gggggcttggccgcccagagggccagctctctgatttgccgctccttgctctcgggagcg
ggtctcgctcagggggcagtgacggaaggttccagactgacaggtgtgtcctggtctgcc
ccctcccccccctccctccaggacgactcctccaccaatcacagcaatgccctggagcac
caggaccccatcactctcgcagtggagatggcggccgtcaatcatagcatcctcgccctg
gccacgcaggcggggggaggattggccctgggcgggacaggcagtgacatcaagaccgag
gtggtggagcccaactag
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