Salvelinus namaycush (lake trout): 120060277
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Entry
120060277 CDS
T07522
Name
(RefSeq) serine/arginine repetitive matrix protein 1-like isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03013
Nucleocytoplasmic transport
snh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120060277
03015 mRNA surveillance pathway
120060277
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120060277
03041 Spliceosome [BR:
snh03041
]
120060277
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120060277
Spliceosome [BR:
snh03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
120060277
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
120060277
NCBI-ProteinID:
XP_038865386
UniProt:
A0A8U1EWJ2
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Position
15:complement(19418920..19435006)
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AA seq
871 aa
AA seq
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MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVIEFIFNQLEEKHPDSKMMQINLTGFLNGKNAREFMRDLWPLLLSAQDNIAGIP
SAFLEQKKEEIKQRQIEQEKLASLKKIDEKKENKDNRERESPRRRKSRSQSPRRRSPVKR
ERKRSHSRSPRRKPSPSSSPPPTAPAVTLVSVTLPQSTEEPEPDTSESAVPEPVIQEASS
TSDLVKPHTVVVVPDSVMKVKEPSPGKASKKEERPKPREKDGRRDRPRHRSRSHSRRRPK
SRSRSYSPRRRPSPRRRMSPRRRSPPRRGPPGPRHRRSRSPVRRRRSRSPSSSGSNSSTP
RSPQKAMKRTSTTPPRKQPRGHAADPSLSPSRRRAPNGSPSGKARRSASPRARKGRSSAS
PSRSAGSKKKPGSRNDSLSPVPKPRHSEASESEGATADPVQQRRQYRRQNRETSSDTGSS
SSSEDEGSKRPGGGPAARNGNVRRRRSRSPSSPRRRHRDCSPRKRRSLSPGGRRSPPRRR
RSPSPPPRRRSPSPPPRRRSPSPRRYSPPIQRRYSPTPLGPQKRRLSGSPPPKRLSPMPK
RRPSRSPKRRSPPPQKRRTPPLPTSPPRHRRSPMLPSNRPGRDTRSPPAVHSNRLSPSPA
NRGRAMHGSASPQGCFDSSGTSPPGQRRQVSPSHSNRAIRRVSRTPEPRKNQRASQSPQP
MRRASSRSPSGSPKPGALKRPAPASGFPSSGCSPSAPLAKKASSGSGSPSPNKNSDTEAG
GKKNKKHKKEKKHKKDKKHKKHKKHKKDKGGVPVAAGDGQENLGMEGDVDSDLKKESDSE
VEERLDDLEKHLREKALRSMRKAGKLSPPLS
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggattcttccgcggcacaagtgcagaacaggacaatcgcttcagcaacaag
cagaagaaacttctaaagcaactgaaatttgcagaatgtctggaaaagaaggtcgatatg
accaaggtgaacctggaggtcatcaaaccttggatcactcagcgagtgacggagatcctg
gggttcgaggatgatgtcgtcatagaattcatttttaaccagctagaagaaaagcacccg
gacagtaagatgatgcagatcaacctgacgggcttcctgaatgggaagaatgccagagag
tttatgagggacctgtggcctctgctgctcagtgcccaggacaacattgccggtatcccc
tccgccttcctggaacagaagaaagaggagatcaaacagagacagattgagcaggagaag
cttgcctctctgaagaagattgatgagaagaaggaaaacaaagataacagggaaagggag
agccccagaaggaggaagtcaaggtcacagtctccacggcgacggtctccagtgaagcgg
gagagaaagcggagtcactcccgctccccgaggcgtaagcccagtcccagcagctcccct
ccaccaacagccccagccgtcaccctggtcagtgttacattgccccagagcactgaggag
ccagagccagacacctctgagagcgccgtacctgagccagtcattcaggaggcctcttcc
accagtgatttggtgaagccgcacactgtggttgtggtacctgactctgtgatgaaggtc
aaagaaccctccccaggtaaggcttctaaaaaggaggagaggcccaagcccagggagaag
gacggcaggagggacaggccccgtcaccgctctcgctcccattcccgcagacgacctaaa
tcgcgctccagatcttactccccacgccggaggccgagccccaggagacggatgtcccct
cgtcgcaggagcccccccagacgtggccccccaggccccagacacaggcgcagtcgctcc
cctgtccgcaggcggcgctctcgctccccatcatcttctgggagcaactcctccacgcct
cgctcacctcagaaggccatgaagagaacgtcaaccacacctcccaggaaacagccccgc
ggccacgcagctgatccctccctcagcccctccaggagaagagcccccaatggtagcccc
tctgggaaggcccgacgctctgcctcccctcgggctagaaagggccggtcctcagcctcc
ccgtccagatcagctggttcaaagaagaagccaggatcaaggaatgattcactgtctcct
gttccaaaacccaggcattctgaggcatcggaatcagagggcgctaccgcagatcctgtg
cagcagcgacgtcagtatcgcaggcagaatcgggagacgtcttcagatactggatcatcc
tcctcatcagaggacgaggggtccaagaggccgggcggggggccagcggcaaggaacggg
aatgtcaggaggaggcgcagccgctccccctcctcccccaggagacgacacagggactgc
tccccccgaaaaagacgctccctctctcctggaggacgtagatctcccccacgccgtcgc
agatctccctctcctcctccgagacgcaggtctccctctccacctcctcgcagacgctcc
ccctcccccaggcggtactctccccccatccagcggcgctacagccctactcccctgggc
ccacagaagagaaggctatcagggtctccccctcccaaacgcctttccccgatgcccaag
cgccgtccctccaggtccccgaagcgcaggagtccccctccccaaaagagacgcacacct
cccctccccacctctcccccccgacacaggaggagccccatgctcccatccaaccggcca
ggccgggacactcgctccccccctgctgttcacagtaaccgcctctccccctcccctgcc
aaccgtggtcgggccatgcatgggtctgctagtcctcaggggtgctttgactcctcgggc
acctctccacctggccagaggcgccaggtgtccccctcacacagcaacagggcaatccgc
agggtgtcccggacaccagagccccgcaagaaccagagagcctctcagagcccccaacct
atgaggagagcgtcatcaaggtccccgtctggttctcctaaaccaggagccttgaagcgg
ccggccccagcctcaggcttcccctcatcgggctgctcgccatcagcccctctggccaaa
aaggccagcagcggctctggcagcccttctccaaacaagaattcagacaccgaggctgga
ggaaagaaaaacaagaaacataagaaggagaagaaacataagaaggacaagaagcacaag
aagcacaagaaacacaagaaggacaagggtggagtgccggtggctgctggggatggccag
gagaacctggggatggaaggggatgtagactccgaccttaaaaaggaatcagacagtgaa
gtagaagagcgtctggacgacctggagaagcacctgcgagagaaggcactgcgttccatg
aggaaagctggaaagctgtccccgccactgtcttga
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