Salvelinus namaycush (lake trout): 120060290
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Entry
120060290 CDS
T07522
Name
(RefSeq) SR-related and CTD-associated factor 8-like isoform X1
KO
K13191
RNA-binding protein 16
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120060290
03041 Spliceosome [BR:
snh03041
]
120060290
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120060290
Spliceosome [BR:
snh03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
120060290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
DUF3525
Motif
Other DBs
NCBI-GeneID:
120060290
NCBI-ProteinID:
XP_038865406
UniProt:
A0A8U1EWL3
LinkDB
All DBs
Position
Sna15:20603988..20677349
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AA seq
1500 aa
AA seq
DB search
MESVKAFNDELYSLNEYKPPISKAKMTNITKSAIKAIKYYKHVVQSVEKFVQKCKPEYKV
PGLYVMDSIVRQSRHQFGQDKDVFAPRFSKNIIGTFQYFYRCPSDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGLPPPSVTPVMTSRDAPVNNATPGTPATPATPANIVSSLPDWAS
QFSNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQEKPQPSLLQALDAGLVVQLQALTAQL
TAAASANPMQLNPLDQRVSSFNKKMLGHFDFGNDSERSEDSKKDSQSSQMPMVSDSIFHQ
LAEQLQQQNLEQLQKQLMEHQQHQQKDGIFGSENTPQQSSSQSQHPEPDNKMDDSIDNQQ
QDMDLDDGPEMGEEIFEPEDKKSKTIDIQSRTRSRSRSRSPRKRRSRSRSGSRKRKHRKR
SRSRSRERKRKLSRSYSSERQALELEKERQKKGLPPIRSKFLSVCSTTLWVGQVDKKATP
QDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYHARQKLSTGSYKIVSKVIKIAWAL
NKGVKQEYKQLWDMDLGVTYIPWEKVKLDDLDGFAEGGMIDQETVNAEWEAAKNAPQPVK
EAVSQAVSAEPMAATNTQQTQQKAFIQQVSMMPVQLPVAQAVPAGGPVPPSFPVSMTMPP
PGYGPPPTFLRAGFNASQPPPGFMQAAGVPQQAGMGSAPTSLVQPSMSHAQDSVKDSPYG
ATVPGSFMPSAIPGQGVFNPLQPGVQTQQGANDKTGQSADGMDAAAELVLQGMQNAMSRR
MGLLGMHPSASLTHPLHQQGLPGQRMPGLMPLDLQPSMLQGAGARFPLLMQQGLSQQSIL
DASLHAQARARAASQMDHFNRAEGAFNRGTNLPNENMSKAEDQPSSRADKSQQGRDQDYR
FPPPQEKQNMGLLRTPPPEHRESMGGGGRGGGAGGVGAGGGGMDGGGGRSALLQTPVREP
ARDSIVGRLQALAGFTPQTQSRWGPPRGNFDERDMRGSPARVSKGFQEERPSSNQGQNFP
NRFENQNRAGAGGVGAGVGGGPAWSRGGANAAAPFADTDMPQDLDECRRPWDRQQRERDD
REFDLRKEMNGNRLERDSREKDRERERERDRERERDHGRERGNREREQECAREREREKER
EKDRERERERDRNKRGAWTPLLPLPQPLLPTPTPTPTLSLTQGKSQALLQLQSRLQLKPG
LLTKPGLLQTPNLLTRSTSQAPTKFLQAPSQSPTQAKNEALPGPEPQTESQSSTQTHASP
KSESSPQTQSTPQNQSSPQNLVSPQAQSPSPPQAQFPPRAQTPPQALSPPLAQSPPQALS
PPPAQSPPQALSPLPAQSPPQALSPPPAQSPPQALSPPPAQSPHQEITDTQEEPDNALWA
NKPEKPQEEPIEEPEPIEEPPSQLVYGTGLRLDTDVVAEPTPERAPTPTLSPTPAPLSMS
PVLTHRAEEPQCLPEPLDVQQPPQHASSSSSSSPKDNGLSEPMEEAEKQPVVEQTDTEGT
NT seq
4503 nt
NT seq
+upstream
nt +downstream
nt
atggagtcagtcaaagcattcaacgacgagctctactctctgaatgagtacaaacctccg
atctccaaggccaagatgaccaatattaccaagtctgcaataaaagcaataaaatactac
aaacatgttgtccagagcgtggagaagtttgttcaaaaatgcaagccagagtacaaggtc
ccaggcctgtacgtcatggactccattgtgcggcagtcacggcaccagtttggccaggac
aaggatgtgttcgccccgcgcttcagcaaaaacatcatcggaaccttccagtacttctac
cgctgcccctcagatgacaagagtaagattgtcagagtcctcaacctgtggcagaagaac
gccgtcttcaagagtgacatcatccagccgctgctggacatggctgcaggactaccccct
cccagtgtcacccctgtcatgaccagcagggatgctccggtcaacaacgctacgcctggt
accccagcgaccccggccactccagccaacatcgtgtccagtctgcctgactgggcgtct
cagttttccaacacagacactgtagctgctgtggcccagatcctgcagagtccacaggga
caacagctccagcagctggtgcagagtctgcagatgcagcaggagaagccccagccttct
ctgctgcaggcgctggatgcaggcctggtggtccagctgcaggccctgacagcccagctc
actgctgcagcctcagccaaccccatgcagctcaaccccctggaccagagggtctcctcc
ttcaacaagaaaatgttgggtcattttgactttgggaatgattcagaacgctctgaagac
tccaaaaaggactcgcaatcatcccagatgcccatggtgtcagactccatcttccaccag
ctggctgagcagctgcagcagcagaacctagagcagttacagaagcagctcatggagcac
cagcagcaccagcagaaggatggaatctttgggtctgagaacacaccccagcagagcagc
agccaatcacagcacccggagccagacaacaagatggatgactccattgacaaccagcag
caggacatggacctggatgacgggccagagatgggcgaagagatcttcgagccagaggac
aagaagtccaagacgattgacatacaatcaagaacacggtccaggtcacgatcaagatct
cccaggaagagacggtccagatcacggtcaggctctcggaaacggaaacatcgcaagcga
tcgcggtcacgctccagagaacggaagaggaagttgtcgcggtcctactccagcgagaga
caagccctcgagctagagaaagagcgtcagaagaaaggactgcctccaatccgatccaag
tttctcagtgtgtgcagcaccactctgtgggtgggacaggtagacaagaaggctactccg
caggacctcaccaatctgtttgaagagtttggtcagattgagtctatcaatatgatccct
ccccgtggctgtgcctacatctgtatggtccacagacaggatgcctaccacgccagacag
aaactcagcactggttcatacaagattgtctccaaggtcattaagatcgcttgggcgctg
aataagggagtgaagcaggagtataagcagttgtgggacatggacctgggggtgacctac
attccctgggagaaggtcaagctggacgacctggacggcttcgctgagggaggcatgatc
gaccaggagactgtcaacgccgagtgggaagcagccaaaaatgcaccacagccagtgaag
gaagcggtgagccaggctgttagcgctgaacccatggcagccactaatacccaacagacc
caacaaaaggccttcatccaacaagtctccatgatgcctgtgcagctccctgtggcccag
gctgtccctgctgggggtcctgtgcctccatccttccctgtttccatgacaatgcccccg
ccaggctatggccccccgcccaccttcctcagagcagggttcaacgcctcccagcctcct
ccaggtttcatgcaggcagcaggtgttcctcagcaagcaggcatgggctcagctcctaca
tctctggtgcagccctccatgtcgcatgctcaagacagcgtgaaggactccccgtacgga
gccactgtcccaggaagcttcatgccctctgccatccctggacaaggggtcttcaacccg
cttcaacctggagtccagacgcagcaaggagccaatgacaagacgggccaatctgctgat
ggcatggacgctgctgcagagttagtactgcaaggtatgcaaaatgcaatgagtcgtcgt
atgggtcttctggggatgcacccctcagcctccctcacccaccccctacaccagcagggc
ctgcctggccagaggatgcctgggctaatgccgctggacctccagcctagtatgctccag
ggagccggggcccgcttccccctcctgatgcagcagggcctgtcccaacagagcatcctg
gatgcctctctccatgcacaggcccgcgccagagcggcctcccagatggaccactttaac
agggccgagggggccttcaaccggggtaccaacctcccaaacgaaaacatgtctaaggct
gaggaccagccttcctctcgggcagacaagagccagcaggggagggaccaagactaccgc
ttccccccgccccaggagaagcagaacatgggcctgctgaggacacctcccccggagcac
agagagtccatgggtggaggtggacgtggtgggggagctggtggtgtgggagctggtggt
gggggtatggacggaggaggaggcagatctgccctgctccagaccccagtgagggagcca
gctagagacagcatagtagggcggcttcaggccctcgccggcttcaccccccagacccag
agtcgctgggggccacctagagggaactttgatgagcgtgacatgcggggctcaccggcc
agggtctccaagggcttccaggaggagcgccctagctccaaccaggggcagaactttccc
aaccgctttgagaaccagaaccgcgctggggcaggaggagtaggtgctggtgttggaggt
ggcccggcgtggagtcgtggtggagctaatgctgcagcaccgttcgctgatactgacatg
ccacaggacttggatgagtgccggcgcccttgggacaggcagcaacgggagagggacgac
agggaatttgacttaaggaaggagatgaacggaaaccgccttgagagagatagccgcgag
aaagaccgggagagggagagagagagggaccgggagagagaaagggaccatggccgtgag
cgtggcaaccgtgaacgagagcaagagtgcgcccgggagagagagcgtgaaaaggagagg
gagaaggatcgggagagagaacgtgagcgggaccgtaacaagcgtggagcctggacacct
cttctccctctaccacaacccctacttcctactcctaccccgaccccaaccctctccctg
acccaaggcaaatcccaggccctgctgcaactacagtccaggcttcaacttaaacctgga
ctcctaactaaaccaggtctgcttcaaactccaaacctcctaactcggtcaacatctcaa
gccccaaccaagttccttcaagccccatcccagtctccaactcaagccaagaatgaagcc
ctccctgggcctgagccccagacagagtcccagtcctctacccagacccatgcttccccc
aagtctgagtcctcaccccagacccaatccactcctcagaaccagtcatcaccccaaaac
ctggtttcccctcaggcccaatcgccatcccctccccaggctcagttcccgccacgggca
caaacgccaccacaggccctgtccccaccactggcacagtcgcctccccaggccctgtcc
ccaccaccggcacagtcgcccccccaggccctgtccccactaccggcacagtcgcctccc
caggccctgtccccaccaccggcacagtcgcccccccaggccctgtccccaccaccggca
cagtcgccacaccaggagatcactgacacccaggaagagccagataatgccctttgggcc
aacaagccagagaaaccccaggaagaacccatagaagagcctgaacccatagaggaacct
ccatctcagttggtctatgggacggggttgaggctggacactgacgtagtggctgagccc
acacctgaacgggcgcccacccctaccctctcccccactcctgccccactctcaatgtca
ccggtcctcacacaccgcgctgaggaaccccaatgcctgccggagcccctggacgtgcag
caaccaccacaacatgcctcctcctcctcttcctcctcccctaaggacaatggactgagt
gagccgatggaggaagctgagaaacagccagtggtagagcaaactgacactgaggggaca
taa
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