Salvelinus namaycush (lake trout): 120060417
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Entry
120060417 CDS
T07522
Name
(RefSeq) pinin-like
KO
K13114
pinin
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03013
Nucleocytoplasmic transport
snh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120060417
03015 mRNA surveillance pathway
120060417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120060417
03041 Spliceosome [BR:
snh03041
]
120060417
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120060417
Spliceosome [BR:
snh03041
]
Complex C
Other components
EJC/TREX
120060417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Aconitase_C
Motif
Other DBs
NCBI-GeneID:
120060417
NCBI-ProteinID:
XP_038865650
UniProt:
A0A8U1GZK9
LinkDB
All DBs
Position
Sna15:30023616..30028969
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AA seq
697 aa
AA seq
DB search
MAVAVGSLQAQLEKAKESLKNVDDNIRKLTGRDPNELRPGQVRRPTIPGIGGGRGRGINL
LRRGLSDISGGPGGPPVKQRDIEGALLRLAGDQRGRRDSRHDSDAEDDDDVKKPVLQSSV
VATSKERTRRDLIQDQTMDERGKQRNRRMFGLLMGTLQKFKQESNVATDRQKKRIEIEQK
LEVQAEQERKKVEGERRELFEERRAKQTELRLLEQKVELAQLQEEWNVHNTKIVKYIRTK
TKPPIFFLPGRMCSATQKLLDESQKKMNVMFEERCEAFAEHLNKMEARPRRQSQRDTALG
KDLKKEDREEGKPTGQVVKVTGNRFDVEMEEEDEATIEEEKKEEGVEGVKRKEDRKKKPV
EKVGEQESKKGGTKADEMEEAEEDSQDTRIVEFRDVGEQMEGTAVVREAEGQARDGDQKM
EDSPVEVGNEKGVEEQQLVKAEKEPLHGQDLTAVSDDQEKSIEMQPTEDDEPCTEVATPL
LSECNPSVEVSDVTSMAPEVQIPLLEAGMDPEPLTTEQSQEADQGAIKQTSNAQPAQAQD
DAVAPKELAPPSKEASRGRKKSKDKKGGGGGRSSSSSSSSSSGSSSSGSSGSSSSGSSSR
SSSSSGSSSSSSSRSRSRGRKDKKRRRRPSERDRERKKAVVERSHKSSKGSGRESKGSKD
KSSKSDRKRTTSEGSRSGKRSSRGDRDRKSDRKEKRR
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggcagtgggatctttgcaagcccagcttgagaaagcgaaagagagtttgaaa
aatgtagacgataatattcgtaaattaactggtcgggatcctaatgaattgagacctggc
caagttagacggccaaccatcccaggtattggaggaggtaggggtcgaggaatcaacttg
ttgagacgtggactctccgacatcagcggtggaccaggaggacccccagtgaaacagagg
gatattgaaggggctctcctgaggctggccggtgaccagagagggaggagagattcacgc
catgacagcgacgctgaagatgatgacgatgtcaaaaagccagtgttgcagtcatcagta
gtagctacctccaaggagcgtacacgtcgagacctgatccaggatcagaccatggatgag
aggggaaaacaaaggaatcgacgtatgtttggcctgttgatgggaacattacagaaattc
aagcaggaatctaatgtggcaacggataggcaaaagaaacgcattgagattgaacaaaaa
ttggaagttcaagctgaacaagagcgcaaaaaagtagagggcgaaagacgagagctcttt
gaggagaggcgtgccaagcagacagagctgagactgttggaacagaaagtggagcttgct
cagttgcaagaggagtggaatgtgcacaacacaaaaattgtcaagtacatccgcacaaag
accaagccacccatcttctttctgcctgggaggatgtgctcagccactcagaagctctta
gatgagtctcagaaaaaaatgaatgttatgtttgaggagagatgcgaggcatttgctgag
catctgaataagatggaggctcggcctcggcgccagtctcagagggacaccgctctgggt
aaggacctgaagaaagaagatcgagaggagggtaagcccacgggtcaggtagtcaaagtg
acaggtaaccggtttgatgtggagatggaggaggaagatgaggcaacaatagaggaggaa
aagaaggaagagggggttgagggtgtaaagcgtaaggaggacagaaagaaaaagccagta
gagaaagttggggagcaggagtctaagaagggggggactaaagcagatgagatggaggag
gctgaggaagacagtcaagacactagaatagtggagttcagagatgtgggggagcagatg
gagggtactgcagtagtaagggaggctgaagggcaggccagggatggggatcagaagatg
gaggatagtccagtggaggtaggtaatgagaaaggagtagaagagcagcaactggttaag
gcagaaaaggagccccttcacggtcaggacctcacagctgtgtcagacgaccaggagaag
agcattgaaatgcaaccaaccgaagatgacgagccatgtacagaagtggccacacccctg
ctctcagagtgcaaccctagtgtggaagtctctgatgtaacatctatggctcctgaggtt
cagatccccctactggaggctggaatggatccagagccgctcacaaccgagcagagccaa
gaggctgatcaaggtgccataaagcagaccagtaatgcccagcctgcccaggcccaggat
gatgctgtggctcccaaggagctggcgcccccgagcaaggaagccagcaggggacgtaag
aagtcaaaggacaagaagggaggtggtggtggcagaagcagcagtagctcatctagcagc
tcctccggctcctcgtccagtgggagctccggctcctcctctagtggctcctccagcagg
agcagctcctccagtggcagctcctccagctcttctagcaggagccgcagccgagggagg
aaggacaagaaacgtaggaggcggccatccgagagggacagggagcggaagaaggcagta
gttgagaggagccacaagtcgtccaaaggcagtggtcgtgaatccaaaggttccaaagat
aagagttccaagtctgacaggaagaggaccacctctgaaggcagccggtcagggaagagg
tcctctcgcggtgacagggatcgcaagtcagataggaaggaaaagaggcgttaa
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