Salvelinus namaycush (lake trout): 120060752 Help Entry 120060752         CDS       T07522                                  Name (RefSeq) collagen alpha-1(II) chain-like   KO K19719   collagen type II alpha Organism snh  Salvelinus namaycush (lake trout) Pathway snh04510   Focal adhesion snh04512   ECM-receptor interaction snh04518   Integrin signaling Brite KEGG Orthology (KO) [BR:snh00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     120060752    04518 Integrin signaling     120060752  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     120060752  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:snh00536]     120060752 Glycosaminoglycan binding proteins [BR:snh00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    120060752 SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI VWC VWC2L_2nd Motif Other DBs NCBI-GeneID:  120060752 NCBI-ProteinID:  XP_038866091 UniProt:  A0A8U1EXV0 LinkDB All DBs Position 16:complement(29880813..29906021) Genome browser AA seq 1489 aa AA seqDB search MFSFVDSRTVLLLVASQVVLLSIVRCQEEDDQEPDSCIQDDHRYNDKDVWKPEPGRICVC DSGSVLCDEIICKEIKECANPIIQPGECCPICPADASAPTDVAIGAKGQKGEPGEIADVV GANGPAGPMGPSGEQGPRGSAGAKGDKGNVGPRGRDGEPGTPGNPGTPGPPGPNGPPGLG GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGETGEPGPA GPLGPHGPPGPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLD GAKGEGGAAGAKGEGGAPGENGAPGPMGPRGLPGERGRPGPSGTAGARGNDGLPGPAGPP GPVGPAGAPGFPGSPGAKGEAGPTGARGTEGAQGPRGEAGTPGSPGPAGASGNPGTDGIP GAKGSAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGELGPI GPQGAPGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGSKGAPGDRGVP GVGGPKGGTGDPGRTGEPGLPGARGLTGRPGDAGPQGKVGPGGAAGEDGRPGPPGPQGAR GQPGVMGFPGPKGANGEPGKAGEKGLVGRQGLIGLAGKDGETGAAGPLGPPGPAGERGEQ GAAGPSGFQGLPGPAGPPGEGGKPGDAGVPGEAGAAGATGPRGERGFPGERGGAGTQGLQ GPRGLPGTPGSDGPKGAIGPAGGAGAQGPPGLQGMPGERGAGGISGAKGDRGDNGEKGPE GASGKDGSRGLTGPIGPPGPAGPNGIKGEGGPSGPTGAAGARGAPGDRGEGGPPGPAGFA GPPGADGQPGAKGELGEAGQKGDGGAHGPQGPSGAPGPVGPTGVSGPKGARGAQGASGAT GFPGAAGRVGSPGPNGNPGAAGPAGSAGKDGPKGVRGDSGTPGRQGDAGLRGAAGAPGEK GDAGEDGLPGPDGPSGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGAGGDR GPPGPVGPPGLSGPSGEPGREGNAGSDGPPGRDGSTGVKGERGNTGPAGAPGAPGAPGAP GPVGPLGKQGDRGEGGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFT GLQGLPGPPGSAGDQGAAGPAGPSGAKGPPGPVGPAGKDGSNGQPGPLGPPGPRGRSGET GPAGPPGNPGPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADEASSSLRQHDVEVD STLKSLNNQIENLRSPDGSQKNPARTCRDLKLCHPEWKSGDYWVDPNIGSTADAIKVFCN METGETCVYPSIANVPQKNWWTSKSKDRKHVWFGETMNGGFHFSYAEDGTNAASIQLTFL RLLSTEASQNLTYHCKNSVAYMDASTGNLKKGLLLQGSNDVEIRAEGNSRFTYSVVEDGC KKHTGQWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL NT seq 4470 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggattcacggactgttctgctacttgtagcatcccaagttgtttta ctatccattgtcagatgtcaggaagaggatgaccaggagccagactcctgcatccaggat gaccatcgttataatgataaggatgtgtggaagccggagccgggtcgtatctgtgtgtgt gacagcgggtcagtgttgtgtgatgagatcatctgcaaggagataaaagagtgtgccaac cctatcatccaacctggagagtgctgccccatctgccctgcggacgccagcgcccccact gacgtggcgattggtgctaagggccagaagggggaacccggcgagattgcagatgttgta ggagcaaatggaccagcaggccctatgggcccctcaggcgagcagggacctcgtggatca gccggagctaagggtgataagggaaatgttggccccagaggcagagatggcgagcctggc acccccgggaaccccggaacccctggcccacccggacctaacggacctccaggccttggc gggaactttgctgctcagatggctggtggattcgacgagaaagctggaggtgcacagatg ggagtgatgcaaggacctatgggccctatgggtccccgtggtccacctggcccttctgga gcccctggcccacaaggtttccaaggtaaccccggagagactggagagccaggcccagct ggcccactgggaccacacggaccacccggaccttctggcaaaccaggaagtgatggtgag gctggcaaacctggaaaggctggtgagcgtggacctgcaggacctcagggagctcgtgga ttccccggaactcctggtcttcctggaatcaaaggacacaggggtcaccctggtctggat ggagctaagggagaaggcggtgctgctggagccaaaggtgagggtggtgctcccggagag aacggcgcgcctggaccaatgggaccacgtggtctgcctggcgagagaggccgtcccgga ccttctggaactgctggtgcccgaggtaatgatggcttgcctggccctgctggtcctccc ggccctgttgggcctgctggagcacccggtttccctggatccccaggagccaagggagaa gctggccccactggtgcacgtggaactgagggcgcacagggaccccgtggggaggctggt acacccggatctcctggacccgctggtgcctctggcaaccctggtactgatggtatccct ggagctaaaggatctgctggcgcttctggaattgctggtgcacctggtttccccgggccc cgtggcccccccggacctcagggagcaacaggacctcttggacccaagggacagtctgga gaccccggtattcctggcttcaaaggagaggctggtcccaagggagagcttggccctata ggtccccaaggtgcccctggccccgctggcgaggagggcaagagaggagcaagaggagag cccggtgctgctggaccacttggacctcctggcgagagaggagctcccggtaaccgtggt ttcccaggtcaggatggtcttgctggttctaagggagcccctggtgaccgtggtgttccc ggtgtgggtgggcctaagggaggcactggtgaccccggccgcacaggagagcctggtctt cctggagccagaggtctcactggtcgccctggagatgctggtcctcaaggcaaagttggt cctggtggtgctgctggtgaggacggtcgccccggcccacctggtcctcagggagcccgt ggccagcctggtgtgatgggattccccggaccaaagggagccaatggtgagcctggcaag gcaggagagaagggtcttgtgggtcggcaaggtctgataggtctggctggtaaagatggt gagactggcgctgctggacctctcggccctcctggacctgctggagagagaggagagcaa ggagctgctggaccttcaggcttccagggtctgcccggacctgccggccccccaggagag ggaggcaagcctggtgatgcgggtgttcctggagaggctggtgctgctggtgctactgga cccagaggcgagcgtggtttccctggtgagagaggcggtgctggaactcagggtctgcag ggacctcgtggacttcctggaactcccggaagtgatggaccgaagggagccattggccca gctggtggtgctggagctcagggacccccaggtctgcagggtatgccaggagagagggga gctggtggaatctccggcgccaagggtgacagaggtgacaatggagagaaaggacctgag ggagcttctggaaaagatggttctagaggtttgactggtcccattggtcctcctggccca gctggtcccaacggcataaagggtgagggtggaccttctggcccaactggtgctgctggt gcccgtggtgctcctggtgaccgtggtgagggtggtcctcccgggcctgctggcttcgct gggccacctggtgcagatggtcagcctggagccaagggagagttaggcgaggctggacag aagggagatggtggtgcccatggacctcaaggaccctctggggcccctggacctgtgggt cccactggtgtttctggacctaaaggagctcgtggtgcccagggggcttctggtgctact ggtttccctggtgctgctggaagagttggttctcccgggcctaacggtaaccctggtgct gctggccccgctggttctgctggtaaagatggtcctaagggagttcgtggtgactctgga accccaggaagacagggagacgctgggctgcgtggagctgctggagcccctggcgagaag ggagatgctggagaggatggtctccctggtcctgatggtccttcaggtccccagggtctg gctgggtcacgtggtattgttggtctgcctgggcagcgtggagagaggggcttccctggc cttcctggtccttctggagagcccggtaagcagggagctcctggtgctggtggtgatcgt ggaccccctgggcctgtggggcctcctggactgtctggaccttctggcgagcccggaaga gagggcaacgctggatctgatgggccccctggtagagatggatccaccggagtcaagggt gagcgtggtaacactggtcctgcaggtgcacctggtgcccctggcgctcccggtgccccc ggccctgttggccctctgggcaagcagggagacagaggagagggaggtgctcaaggacct gccggacccgctggaccagctggcgctagaggaatggctggaccccaaggaccccgtgga gacaagggagaggctggcgagacaggagagaggggacagaagggacaccgtggcttcacc ggtctgcagggtcttcccggacctccaggctccgctggagaccagggagctgctggacct gccggacctagtggtgctaagggaccccctggcccagtcggccccgctggtaaggatgga tctaacggtcagcctggacccctcggaccccctggacctcgtggtcgttctggagaaact ggccctgctggtccacctggtaaccccggaccccctggtcctcctggtcctcccggccct ggcatcgacatgtctgcctttgctggcctgtctcagcctgagaagtctccggatcccctg aggtacatgagagctgatgaggcgtccagctccctgaggcagcacgacgtggaggtggac tccacactcaagtccctcaacaaccagatcgagaacctgcgcagccctgatggtagccag aagaaccctgcccgcacctgcagagacctcaaactgtgccacccagagtggaaaagcggt gactactgggtggatcctaacattggtagcacagctgatgccatcaaggtcttctgcaac atggagactggcgagacctgtgtgtaccccagcatagccaacgtgcctcaaaagaactgg tggacaagcaagagcaaggaccgcaaacacgtctggttcggagagaccatgaatggagga ttccacttcagctacgctgaggatggtaccaacgctgccagtatccagctgaccttcctg aggctgctgtccacagaagcatctcagaacctcacttaccattgcaagaacagcgtggcc tacatggacgcatccaccggcaacctgaagaagggtctgctgctccagggctccaacgac gtggagatcagagctgagggaaacagccgcttcacctacagcgttgtggaggatggctgc aagaaacacacaggccagtggggaaagactgtcttcgagtacaaaacacagaagacctcc cgtctgcccatcgtggacattgctcccatggacattggaggagcggaccaggagtttggt gtggatgtgggcgcagtctgcttcttgtaa

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