Salvelinus namaycush (lake trout): 120061012
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Entry
120061012 CDS
T07522
Symbol
smc1a
Name
(RefSeq) structural maintenance of chromosomes protein 1A isoform X1
KO
K06636
structural maintenance of chromosome 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04110
Cell cycle
snh04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
120061012 (smc1a)
04114 Oocyte meiosis
120061012 (smc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
snh03036
]
120061012 (smc1a)
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
120061012 (smc1a)
Meiosis-specific proteins
Cohesin complex and associated proteins
120061012 (smc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_23
AAA_21
AAA_29
AAA_15
ABC_tran
SlyX
Motif
Other DBs
NCBI-GeneID:
120061012
NCBI-ProteinID:
XP_038866421
UniProt:
A0A8U1EYJ4
LinkDB
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Position
Sna16:13309956..13329394
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AA seq
1231 aa
AA seq
DB search
MGYLKLIEIENFKSYKGRQIIGPFHKFTAIIGPNGSGKSNLMDAISFVLAEKTSNLRVKT
LKDLIHGAPVGKPAANRAFVSMVYHEDSGEERTFTRIIIGSSSEYRINSKVVNLAEYSEE
LEKLGILIKARNFLVFQGAVESIAMKNPKERTALFEEISRSGELAQEYDRRKKEMVKAEE
DTQFNYHRKKNIAAERKEAKQEKEEAERYQRLKDEVVKAHVQMQLFKLYHNDAEIDKLNR
ELSHRNKEIDKDRKKMDHVEEELKEKKKELGRMMRDQQTVEKEIKEKDAELNQKRPQYIK
AKENTSHKIKKLEAAKKSLQNAQKLYKKRKGDMDELEKEQGAVEMARQEFDDRMEEEAQS
QGQDLTLEENQVKAYHRLKEEASKRAATLAQELEKFNRDQKADQDRLDLEERKKVETEAK
IKQKIREIEENQKRIEKLEDYITTSKQSLDEQKRMEEELTEEVEGAKKRIDEINLELNQV
MEQLGDARIDRQENSRQARKAEIMESIKRLYPGSVYGRLIDLCQPTQKKFQIAVTKVLGK
NMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPTDEKLRELRGAKLVIDVIRY
EPPHIKKALQYACGNALVCENVEDARRIAFGGPYRHKTVALDGTLFQKSGVISGGASDLK
AKARRWDEKAVDKLKDKKEKLTEELKEQMKAKRKEAELRQVQSQAHGLQMRLKYSQSDLE
QTKTRHLSLNMQEKSKLESELANFGPRINDIKRIIQSREKEVNNLRDRMNVVEDEVFIEF
CKEIGVRNIREFEEEKVKRQNEIAKKRLEFETQKTRLGIQLDYEKNQLKEDKEKVMMWEQ
TVKKDEAEIERLKKEEHRHMKIIDETMAQLQDLKNQHLTKKSEVNDKNHNMEEIRKKLGG
ANKELTQLQKEVTAIETKLEQKRSDRHNLLQACKMQDIRLPLRSGTMDDIGQGEGSTQQE
ESSSSQRTSSTVLAKEALIEIDYSILSEDLKDALAEDEIKAEMHTLQQRLNEQQSILQRI
SAPNMKAMEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFEAVSTN
IDEIYKALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALAL
LFAIHSYKPAPFFVLDEIDAALDNTNIGKVANYIKDQSVNTQAIVISLKEEFYTKADSLI
GVYPEQGDCVISKVLTFDLSVYPDANPNPNE
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atgggttatttgaaactaatagagatcgaaaacttcaaatcttacaagggcaggcaaatc
atcggtccctttcacaagtttaccgcgattattggacccaatggatccggcaagtccaac
ctcatggacgccatcagctttgtgctggctgagaagaccagcaacctgcgtgtgaagact
ctgaaggacctgatccacggagctcccgtggggaagccggcagccaacagagcctttgtg
agcatggtgtaccatgaggacagtggggaagagcgcaccttcaccagaatcatcattggc
tcgtcgtcagagtaccgtatcaacagtaaggtggtgaatctggcagagtacagcgaggag
ctggagaaactaggaatcctcatcaaggccaggaacttccttgtcttccagggtgcagtg
gagtcgatagccatgaagaaccctaaggagcgtactgctctgtttgaggagatctcccgg
tctggggagctggctcaggagtacgaccgtaggaagaaggagatggtgaaggctgaggag
gacacacaatttaactaccaccgcaagaagaacatcgccgcagaacgcaaagaggccaag
caggagaaagaggaggctgagcgttaccagcgtctgaaggacgaggtggtgaaggcccac
gtccagatgcagctgttcaagctgtaccacaacgacgccgagatcgacaagctgaaccgc
gagctgtcgcaccgcaacaaggagatcgacaaggaccgcaagaagatggaccacgtggag
gaggaactgaaggagaagaagaaagagctgggacggatgatgagagaccaacagacagtg
gagaaagagatcaaggagaaggatgctgaactgaaccaaaagcgtccgcagtacatcaag
gccaaagagaacacctcccacaagatcaaaaaactggaggcagccaagaagtccctccag
aacgcccagaagctgtacaagaagaggaagggggacatggatgagttggagaaagagcag
ggtgctgtggaaatggcccggcaggagtttgacgaccgcatggaggaggaggctcagagc
caaggacaggacctcacactggaggaaaaccaggtgaaggcctaccaccgcctgaaggag
gaggccagtaagcgggcggccactctggcccaggagctggagaagttcaacagagaccag
aaggccgaccaggaccggctcgaccttgaggaaaggaagaaagtggagactgaggccaag
atcaagcagaagatccgtgagatagaggagaaccagaagcgtattgagaagctggaggac
tacattaccaccagcaagcagtctttggatgaacagaagagaatggaggaggagctgact
gaggaggtagagggggccaagaagaggatcgacgagatcaacctggaactcaaccaggtg
atggagcagctgggcgacgccaggattgacagacaggagaacagcaggcaggcacgcaaa
gcagagatcatggagagcatcaagagactgtatcccggatctgtgtacggccgtctgatc
gacctgtgtcagcccactcagaagaagtttcagatcgctgtgaccaaggtgctgggcaag
aacatggacgccatcattgtggactcggagaagaccggcagagactgcatccagtacatc
aaggagcagagaggagagccggagaccttcctgcccctcgactatctggaggtgaagcct
acagatgagaagctgcgtgagctgcgtggagccaagctagtgatcgatgtgattcgctac
gagccgcctcacattaagaaggccctgcagtacgcatgtggtaacgcactggtctgtgag
aacgtagaggacgctcgacgcatcgcctttggaggaccctacagacacaagacagtggcc
ctggacggtactctgttccagaagtccggtgtgatctctgggggtgctagtgatctgaag
gctaaggccaggcgctgggatgagaaggctgtggacaaactcaaggacaagaaggagaaa
ctcactgaggaactcaaggagcaaatgaaggctaagaggaaggaggcagagctgcgccag
gttcagtctcaggcccacggcctccagatgagactcaaatactcccagagcgacctggag
cagaccaagacccgacacctctccctcaacatgcaggagaaatccaagctggagagtgag
ctggctaacttcggccctcgcatcaacgacatcaagaggatcatccaatcccgtgaaaag
gaggtcaataatttgagagaccggatgaacgttgtggaagatgaggtgtttatcgagttc
tgtaaggagattggggtcaggaacatcagagagttcgaggaggagaaggtgaagaggcag
aacgagatcgccaagaaacggctggagtttgaaacccagaagactcgtctgggcatccag
ctggactatgagaaaaaccagctgaaagaggacaaggagaaggtcatgatgtgggagcag
accgtcaagaaggacgaggcggagatagagcgactcaagaaggaggagcaccgccacatg
aagatcatcgacgagaccatggcccagctgcaggacctgaagaaccagcacctcaccaag
aagtccgaggtcaacgacaagaaccacaacatggaggagatacgcaagaagctgggaggc
gccaacaaggagctgacccagctgcagaaggaagtgacggccatcgagaccaagctggag
cagaaacgcagcgaccgccacaacctgctgcaggcctgtaagatgcaggacatcagactg
ccgctacgctctgggaccatggacgacatcggccagggagaggggagcacccagcaggag
gagtctagcagcagtcagagaacgtccagtactgtcctggctaaagaggctctcatagag
atagactacagcatcctgtctgaagacctcaaggacgcgctggcggaggatgagatcaag
gcagagatgcacacactgcagcaacgtctcaacgagcagcagtccatactgcagagaatc
agcgcacccaacatgaaggccatggagaaactagagtctgtcagggacaagttccaggag
accagcgacgagtttgaggcggcccgtaagcgagccaagaaggccaagcaggcgtttgag
cagatcaagaaggagaggtttgaccgcttcaacgcctgttttgaggctgtatccaccaac
atcgatgagatctataaagccctgtcacgcaacagctctgcccaggccttccttgggccg
gagaacccagaggagccttacctggatgggatcaactataactgtgttgcccctggtaag
cggttcagacccatggacaacctctctggaggggagaagactgtagccgccctggctctg
ctgttcgccatacacagctacaagccggccccattcttcgtcctggatgagattgatgct
gctctggacaacaccaacattggcaaggtggccaactacatcaaagaccagtcagtgaac
actcaggccatagtgatctctctaaaggaagagttctacaccaaggctgactctctcatc
ggggtctatccagagcaaggagattgcgtcatcagcaaagtgctgacctttgacctgtct
gtgtaccctgacgccaaccccaaccccaacgagtag
DBGET
integrated database retrieval system
