Salvelinus namaycush (lake trout): 120061311
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Entry
120061311 CDS
T07522
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120061311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120061311
03036 Chromosome and associated proteins [BR:
snh03036
]
120061311
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
120061311
Coactivators
SAGA/TFTC/STAGA complex
120061311
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
120061311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
tRNA-synt_1c
Motif
Other DBs
NCBI-GeneID:
120061311
NCBI-ProteinID:
XP_038866956
UniProt:
A0A8U1H1D5
LinkDB
All DBs
Position
16:complement(31718158..31728664)
Genome browser
AA seq
969 aa
AA seq
DB search
MAAGSDLLDDVFFNTEVDEKVVSDLVGSLESELTGSGRGKSSVRVQAAANNIDNSAVGRN
SNVQDSEMGLSQELAKPGTGVPGGVINSRMSQGSTMYAAVGTTAAGSSMTAGHSPSKTGA
VSGVITGVPDHGAGIRKTGAAGVQTLNGRSVVINSHNSGSVAALVSSASSTVPAVAVVNN
GPSSVVKGNVIIPSTSSTVIQTPLMHNAVTSTVISSQLSVLNSVPTVTLVRPPMQTPGTV
TSQSVSNNTVLIRSVNVAHPASSEVQINKLESPKTTIQTTSQVTAPSVVGKSLVLQNVRT
SIPSTIAACPGGIKAIAPQVFSPRLPQPQQNTSNIQNIQLPPGMVLVRSESGQLLMIHQQ
TLAQMQSQSQSAMTPRAATPTSTPPVQITSVQAPGTPMMSRQMTNTITKQGSPAQTTVQA
TTTLQRPPVLQQNTIMLGGAAATSGQTPVQPCSAAVTQRAGTPGTPGAPTVVSTTEILEN
VKKCKNFLSTLIKLASSGKQSSETTANVKELVKSLLEGKIEAEDFTSQLYRELNSSPQPY
LVPFLKRSLPALRQMTPDSAAFIQQSQLLHAGAQPAAQPAASSKALTAVVLGGTSTAQSR
LNSTSPGTKGTMHQSPVSSLAQTPHSKPGLMVPQQQGAMGRPQVSLAQSPMVTLRGQPHS
HIIMGQPQVVRQLQTVPVVKQALAPGAKVTLGPQSMLSVVLKNRQKEAGGGTFKDDDDIN
DVASMAGVNLSEESARILATNSELVGMVTRSCKDEAFLYTSSLTQRVHEIGRRLGVTDLG
PEVINYVSHATQHRLQNLLEKVTVVAQQKSITFKEDDKCEQVSDVRAQLKFFEQLDQMEK
QRKEEQEREILMKAAKSRSRQEDPEQLRLKQKAKEMQQQELNQIRQKEANMTALAAIGPR
KKRKMNSPVSGTGAEDLCSGPSPSGGYSSGGSRPQRQRITRVNLRDLLFCLENERETSRS
HLLFKGFLK
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgggctccgatttactggatgatgttttcttcaacacagaggtggacgagaaa
gtagttagtgatctagttgggtctttggagtctgagctcacgggatcgggtcgtggaaag
tcttcagtcagggtccaggctgcagcaaataacattgacaactcagctgtaggtcgcaat
tccaatgtccaggacagcgaaatgggactttcacaagagcttgctaaaccagggactggc
gtgccagggggtgtcattaatagtaggatgtcccagggttcaaccatgtatgctgcggtc
gggacaacggcggcgggctcgagcatgacagccgggcacagtccgagcaagactggggca
gtcagtggtgtgataacgggggttcccgatcacggagctgggatcagaaaaactggggcg
gctggtgtacaaactttaaatggaaggagcgttgtgataaactctcataattcaggaagt
gttgccgctttggtgagctcggcaagcagcacagtgcccgccgtcgcggttgtcaacaac
ggaccgagctccgtggtcaaaggaaacgtaatcataccctcaacttccagcacagtcatt
caaacacctcttatgcacaatgctgtcacttcaactgtgatatcgtctcagctgtctgtt
ctaaacagtgtgcccactgtcacgctcgtgaggccgcctatgcaaacccccggaacagtc
acatcgcagagcgtgagtaataatacggttctgatacgatctgtcaacgttgcccaccct
gcaagttcagaagtgcaaatcaacaaattggagtcgcctaaaacgaccatacaaacgact
tcacaagtgaccgcccccagtgttgtaggtaaaagcctggttttacaaaatgtgaggacc
tccatcccatcgactattgcagcctgtcctggtgggataaaggcgatcgcgccacaggtg
ttctccccgagacttccacaaccccaacaaaatacttcaaacatccagaacattcagctc
cctccaggcatggtgctggtacgcagtgagagtgggcagcttctgatgatccaccagcag
actctggcccagatgcaatcccagtcccagagcgccatgaccccacgggcagccaccccc
accagcactccccctgtccagatcacttctgtacaggctccagggacgcccatgatgtcc
cgtcagatgaccaacaccatcactaagcagggctccccggcccagaccaccgtccaggcc
accaccaccctccagaggcctcctgtactacaacagaacaccattatgctgggtggagcg
gccgccacctcaggtcagactccagtgcagccttgctcggcagcagtcacccagagagca
gggacccctgggacaccaggcgcccccacggtcgtttctaccacggagatcctggagaac
gtgaagaagtgtaagaacttcttgtccacgctgatcaaactggcatccagcgggaagcag
tcgtctgagaccacagccaacgtcaaggagttagtcaagagcctgctggagggtaagatc
gaagcggaggacttcaccagtcagttataccgggagctcaactcctctcctcagccatat
ctcgtgcctttcctcaagaggagtcttcctgcactgcgtcaaatgaccccagactcggca
gccttcatccagcagagccagctgcttcacgctggcgcccagcctgccgcccagcctgcc
gcctcctccaaggccttgactgctgtggtgctggggggcacgtccacggcacaatcgcgt
ctcaacagtaccagccctgggaccaaggggaccatgcaccagtctcctgtcagcagcctg
gcccagacacctcatagcaagcctggcctgatggtgcctcagcagcagggggcaatgggg
aggcctcaggtgtctctggcccagtcacccatggttacgctccgaggccagccccacagt
cacatcatcatggggcagccgcaggtggtcagacagctgcagacagttcctgtagtgaag
caggctctagcaccaggggccaaggtaacacttgggccccagtctatgctctctgtagta
ctgaagaacaggcagaaggaggcaggcggaggaaccttcaaggatgatgatgatataaat
gacgtggcctctatggctggagtcaacctatcagaggagagtgcccgcattctggcaacc
aactctgagctggtcggcatggtgactcgctcctgtaaagacgaggccttcctctacacc
tcctcactaacccagagagtacatgagataggcaggaggttaggggtgactgacctgggg
ccggaggtgatcaactacgtttcccatgctacacagcatcggctgcagaacctgctggag
aaagtgacggtggtggcacagcagaaaagcatcaccttcaaggaggatgataagtgtgaa
caggtgagtgacgtgcgtgcgcagctgaagttctttgagcagctggatcagatggagaaa
cagaggaaggaggagcaggagagagagatcctgatgaaggcagctaagtctcgatcacga
caagaggacccagaacagcttcggcttaaacagaaggctaaagagatgcagcagcaggaa
ctgaatcagatcaggcagaaggaggccaacatgacggccctggcagccatcggccccagg
aagaaaaggaaaatgaactcccctgtcagcggaaccggggctgaggacttgtgctctggt
ccctctccatcaggtgggtacagtagcggaggctccaggcctcagcgccagcgcatcacc
cgggtcaacctcagggacctgctcttctgtctggaaaatgagagggagaccagccgctca
cacctgctctttaaaggcttcctcaaataa
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