Salvelinus namaycush (lake trout): 120061362
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Entry
120061362 CDS
T07522
Name
(RefSeq) RNA-binding protein 39-like isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
snh03041
]
120061362
Spliceosome [BR:
snh03041
]
Common components
Common spliceosomal components
General mRNP proteins
120061362
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Paralog
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GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_5
RBD_DEAH11
RRM_7
RRM_8
CDC45
Motif
Other DBs
NCBI-GeneID:
120061362
NCBI-ProteinID:
XP_038867054
UniProt:
A0A8U1F016
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Position
Sna16:complement(35949244..35959661)
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AA seq
535 aa
AA seq
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MADDFDIEAMLEAPYRKDEIKSSSANGHEERSSKKKKRSHSRSSRSPSSDKRRSKSKDRK
KSRDRKRSKSREKKRSRSKERRRSGSHSRERAGRYRGRRSPFLGPKFNGGPGGKIGPPHA
NKLSRRRSRSRSPFKKDKSPVRQPIDNLTPEERDARTVFCMQLAARIRPRDLEDFFSAVG
KVRDVRMISDRNSRRSKGIAYIEFLEANSVPLAIGLTGQRLLGVPIIVQASQAEKNRAAA
MANNLQKGNAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETARSKGYGFIS
FADAECAKKALEQLNGFELAGRPMKVGNVTERTDSSTASSFLDNDELERTGIDLGTTGRL
QLMARLAEGTGLQIPPAAQQALQMSGSMHSSSIHFGNMAAGTAVANPALNLGPSMNQAMN
LPTQPLATHCLQLSNMFSPQSENEPGWDIEIQDDVMEECNKHGGIVHIYVDKNSPQGNVY
VKCPTIPTAMAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSVTATQLLMPSRR
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgattttgacattgaggctatgctagaggctccatacagaaaggatgagatc
aagtcctctagcgctaatggacatgaggagcgcagtagtaagaagaaaaagaggagccac
agtaggagtagtcggagcccgagctctgacaagcgcagaagcaagagcaaagacaggaag
aagagccgggaccggaaaaggagcaagagtcgggagaagaaacgcagccgcagtaaggag
cgccgccgcagtggctcccatagcagggagcgtgccgggcgctacagaggacgccgcagc
ccctttttggggccgaaatttaacggtggtccaggagggaagattggcccaccacatgcc
aacaaactaagtcgtaggcgctcaagaagtcgtagtcccttcaagaaagacaagagtcca
gtaaggcaaccaattgacaacctgaccccagaggagagggatgcccgtactgtgttctgt
atgcagctggcagcaagaatccgaccacgagatctagaggacttcttctctgctgtgggg
aaagtgagagacgtcaggatgatctccgatagaaactccaggaggtcaaagggcatcgcc
tacattgagtttctggaggcgaattcagtcccgctggccattggcttgactggacagaga
cttcttggagtgcccatcattgtccaggcctctcaggctgagaagaacagagcagcagca
atggccaacaaccttcagaagggtaatgctggccccatgcggctgtacgtgggctctctg
cacttcaacatcacagaggacatgctgcgaggcatcttcgagcctttcggaaggattgag
agcatacagctgatgatggacagtgaaactgcacgatccaaaggatatggtttcatctca
tttgcagatgcagagtgcgctaagaaagcactggagcagctgaatggctttgagctggcc
ggacggcccatgaaggttggtaacgtgacagaacgcaccgactcctccaccgccagctcc
ttcctggacaacgacgagctggagaggacgggcatcgacctgggcaccaccgggcgcctg
cagctcatggcccggctggcagagggtactggtcttcagatccctccagctgcacagcag
gctctacagatgagtggttccatgcactcctcttcaatccacttcggcaacatggcagct
ggtacagctgttgccaaccctgccctgaacctgggtccaagcatgaaccaggccatgaac
ctcccaactcaaccactggctacacactgcctacagctgtccaacatgttcagcccacag
tcggaaaatgagcctggttgggacatcgagatccaagacgacgtcatggaggagtgcaac
aaacatgggggaattgtccatatatacgtcgacaagaactcccctcagggcaacgtgtac
gtaaaatgccccacaatcccaacagcaatggctgcagtgaatgccctacatggacggtgg
tttgcaggtaaaatgatcactgcagcgtacgtacccctcccaacctaccataaccttttc
cctgattcagtaacggccacccagctactgatgccttcgcggcgataa
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