Salvelinus namaycush (lake trout): 120061428
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Entry
120061428 CDS
T07522
Name
(RefSeq) probable ATP-dependent RNA helicase DHX35
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
snh03041
]
120061428
Enzymes [BR:
snh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120061428
Spliceosome [BR:
snh03041
]
Complex C
Other components
Complex C specific factors
120061428
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
ABC_tran
AAA_19
nSTAND3
AAA_7
Cas3-like_C_2
AAA_30
PG_binding_1
ATPase
AAA_23
Motif
Other DBs
NCBI-GeneID:
120061428
NCBI-ProteinID:
XP_038867159
UniProt:
A0A8U1F092
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All DBs
Position
Sna16:complement(39813992..39829316)
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AA seq
699 aa
AA seq
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MAAPLSTMKFWKPGSEAPGISEERHVTTETTGSPIIFNPHTALSIEKQRQKLPVFKHRNN
ILYLVESYQTVIIVGETGCGKTTQIPQYLLEAGWAAEGKVIGVTQPRRVAAISVANRLAE
ERGALLGHEVGYTIRFDDCSDPHATRIKFLTDGMLVREMMADPLLKKYSVLMLDEAHERT
LYTDIAIGLLKKIQKKRRDLRLIVASATLDAKKFQEFFNLNETGDPNKDTCGILTVEGRT
FPVDVFYTVSPVPDYVKATVETVLKIHETEDDGDVLAFLTGQEEVEKVVSLLQEQARALG
RLGMKKYLKVLPMYAGLPYTDQMKVFERTPPTVRKVVVATNIAETSITINGIVFVIDCAF
VKLRAYNPCTTIESLVVTPISKASASQRAGRGGRNRAGKCFRLYTEEDFEKLPASTVPEM
QRTNLAPVILQLKALGIDNVLRFSFLSPPPAQSMVQALELLYALGGLDQYGRLTDPMGMR
MAEFPLSPMFAKMLLESGNFGCSKEIVTIAAMMQIQNIFMVPANQKKPAAREHRKFAVAE
GDHLTMLNVYEAFIKHQKSSQWCQEHFLNYKGLQRAMTVREQLRRLMNKFKVPRTSSEGD
PDVILRCIVSGFFANAARMHHSGSYRTLRDDRELHIHPNSVLFGEKPTKWVVFNEVVQTS
KYYMRDVTAVESSWLVELAPHFYKQAKHGSLTSKRSRVL
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggcggcccccctctccacgatgaaattttggaaaccgggttcggaggcccccgggata
tcggaggagcggcatgtcacgacagaaacgacaggctcccccataattttcaaccctcac
accgcgctgtccatcgagaagcagcgacagaaacttcctgttttcaagcacagaaacaac
atcctttacttggtggagagttaccagacagtgatcatcgtaggagagacaggatgtggg
aagactacacagatcccccagtatttgctggaggctggctgggcagctgaggggaaggtg
attggtgtgacacagcctcgtagagtggctgctatctcagtagccaatcgtttggcagaa
gagcgtggagccctgttggggcatgaggtgggctataccattcgctttgatgactgctct
gacccccatgccacccgcattaagttcctgacagatgggatgctggtgagagagatgatg
gctgatcctctactgaagaagtacagtgtcctaatgctcgacgaggcccatgaaagaacc
ctctacacggacatagccatcggcctgctaaagaagattcagaagaagcgcagagacctc
aggctgatagtggcctctgccactctggatgccaagaaattccaagagttctttaacctg
aatgagactggagatcctaacaaggatacgtgtggaattctgacggtggagggacgcacc
ttccctgttgacgtcttctacactgtcagcccagtcccagactatgtgaaggccacagtg
gagacggtgctgaagatccatgagactgaggatgatggagatgttctggccttcctcact
ggacaggaggaagtggagaaggtggtgtctctgctccaggagcaggccagagctctgggc
cgtctcggcatgaagaaatacctcaaggtgctgcccatgtacgcaggcctgccctacact
gaccagatgaaggtgtttgagaggacgccccctactgtccgcaaggtggtggtggccact
aacatagcagagacgtccatcaccatcaacggcatcgtgtttgtgatcgactgtgcgttt
gtcaagctgcgggcatacaacccttgcactaccatcgagtcgctggtggtcacgcccatc
tccaaggcctcagccagtcagagggcaggacgagggggacgcaaccgagccgggaagtgc
ttcagactatacacagaggaggattttgagaagctgcctgcgtccacggttcccgagatg
cagcgcaccaacctggcccctgtcatcctgcagctcaaagctctgggcatagacaacgtg
ctgcgattcagctttctctctcctcctccagcccagtccatggtccaagccctggagctg
ctctacgccctggggggtctggaccagtatggtcgtctgactgaccctatgggcatgcgt
atggcagagttccccctcagccccatgtttgccaagatgctgctggagtcaggaaacttt
ggctgttccaaggagatcgttaccatagcagccatgatgcagatccaaaacatcttcatg
gtgccagccaatcagaagaaaccagcagcgcgggagcatcgcaagtttgctgtggcggaa
ggagatcatctcaccatgctcaatgtgtacgaagccttcatcaagcaccagaagagctct
cagtggtgtcaggaacacttcctcaactacaagggtctgcagcgagccatgactgttcga
gaacagctcagacgactcatgaataaattcaaggtgccacgcacctccagcgaaggtgac
ccggatgtgatcctgagatgcattgtgtctgggttttttgccaacgctgcccgcatgcac
cactcaggatcctacaggactctacgggatgacagagagcttcacatccatcccaactct
gtgctgtttggagagaagcctacgaagtgggttgtcttcaatgaagtcgtgcagacctct
aagtactacatgcgtgatgtcacagctgtagagtcctcctggttggtcgagcttgctccc
cacttttacaagcaggctaagcatgggtcattaaccagcaagagatccagggtcctctga
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