Salvelinus namaycush (lake trout): 120061998
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Entry
120061998 CDS
T07522
Name
(RefSeq) phospholipid-transporting ATPase ABCA1-like isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh02010
ABC transporters
snh04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120061998
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120061998
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
snh02000
]
120061998
Transporters [BR:
snh02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
120061998
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Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
120061998
NCBI-ProteinID:
XP_038867715
UniProt:
A0A8U1F159
LinkDB
All DBs
Position
Sna17:10315496..10358717
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AA seq
2290 aa
AA seq
DB search
MSITTQLGLLLWKNFTYRRRQTIQLLIEIVWPLLIFFILISVRLNYPPYEQHECHFPNKA
MPSAGTLPWIQGIICNANNPCFRNPTPGESPGVVGNFNESIISRLFSDAKKILLYSQNDR
NLDGFKDLIQALKTLQANTEGFKLKDFLHDNETLSTFLLRNASFSEHAVHQIIEANVNLE
KVLVKGFGVHLRDMCKSNGTSVEDFVTIADSEVSSLVQEILCRSPGSWLNQAESHFLNNL
DFLKPIRKDVRADPEAVQQVAEATDNLLESLGSLAIELASMKSWSDLRNEIIFLTENATS
SPSHMYQAVSRIVCGHPEGGGLKIKSLNWYEDSNYKALFGNHNTTDGEEPISAYDNASTP
YCNAMMRNMESSPVSRMIWQALKPLLMGKILYTPATPATQKIIHEVNKTFQELGVLRELG
GMWEEVRPKAWTFMESSEQMDLVRTLLKNNGTARFFTSQLAGTEWTVEDVSNFLTKHSED
TRPHGTAFTWREVFNETDQAIMSISRFMECVNLDKMEPVANEERMVNKSMALLDDRKFWA
GIVFPDIEANSSELPAIVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFS
YLQDIIEHSIITVVTGAKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAI
IIKSVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLISASLLVVLLKMGNLLPYSD
PGVIFLFLGSFAVVTIMQCFLISTMFARANLAAACGGIIYFTLYLPYVLCVAWQDYVGFG
AKIVASLLSPVAFGFGCEYFALFEEQGIGIQWNNLFNSPMEEDNFSLTTAIIMMYFDSFL
YMVMTWYIESVFPGQYGIPRPWYFLFTKSYWFGEGDNRKTDFSQNKRRNCEAVCIEEEPA
HLKPGVFIENLVKVYPHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPT
SGTAYIMGKDIRSELSAIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEQVKSEIE
QILIDTGLLHKRTSKTSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDL
LLHYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKG
PEPSLNSFHNSSSTVSFTKKEEDCPSESSSDAGLGSEHESEAATIGNAFVPPDVSLISSL
IFKHVPAARMVEDLGHELTYILPYGAAKDGAFVELFKDMDDRLPDLGISSYGVSDTTLEE
IFLKVAEDNGVDTELPSDGTLPMPRRRIHHAFGGGNAFGGDHQSCLRPQIDDDNNDHNDS
DAYPESRETDFLNGSDGKGSYQVKGWSLTRQQFVALIWKRFLYAQRSRKGFFAQIVLPAV
FVCVALVFSLIVPPFGKYPSLELQPWMYEEQSLFISDDAPEDANTQRLLSALTEGPGFGT
RCMEGQPITDSHCTMGDEDWTIPEVPESLLELFRTGNWTMEEPSPTCACSCDGRKKMLPE
CPTGAGGLPPPQMKISETDTLQNLTGRNISDYLVKTYAEIIGKSLNNKIFVNEFRYGGFS
LGARSTQVLPPAGEVDDAIARVRKIFELEKGAAADRFLASLSSFINGLDTKNNVKIWFNN
KGWHSMGAFLNVMNNGILRANLPPGQDPSKFGIRAFNHPLNLTKEQLSQVALMTTSVDVL
VSICVIFAMSFVPASFVVFLIQERVSKAKHMQFISGVQPLLYWTANFIWDMCNYIVPATL
VIIIFVCFQQKAYVSSTNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAYVVLTSVNIL
IGINGSISTFVMELFGNNEIGGINDILKNVLLIFPHFCLGRGLIDMVKNQAMADALERFG
ENRFRSPLEWDMVGKNLFAMAVEGVVFFIITVLIQYRFCIKPINLHTKLPPVGEEDEDVA
RERQRIVNGLGHGDILELRQLTKVYKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTF
KMLTGDSIVTSGEAFLAGKSILREIDEVHQNMGYCPQFDAINDLLTGREHLEFYAVLRGV
PEKEVCEVAEWGIRKLGLVKYVDKAAGSYSGGNMRKLSTAMALIGGPPVVFLDEPTTGMD
PKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFG
DGYTIILRVAGPDPDLPPVMKFIESKLPGSTLKEKHRNMLQYQLSSSLTSLAHIFSILAK
NKDLLRIEDYSVSQTTLDQVFVNFAKDQSDDYHSKDNSVKRKEAVVDITPLSSRQAEEKL
AEERLKESLV
NT seq
6873 nt
NT seq
+upstream
nt +downstream
nt
atgtccatcacaactcagctgggcttgctgttgtggaagaactttacctacagaagaagg
caaacgatccaactgctgattgagatagtatggcccctgttgatcttcttcattttgata
tcagtgagactgaactaccctccgtacgaacaacatgagtgtcatttccccaacaaggcc
atgccctcggcaggcaccctgccgtggatccaaggcatcatctgcaacgccaacaacccc
tgcttccgcaaccccactcctggagagtcccctggggtcgtgggcaacttcaatgagtcc
ataatctctcgtttgttctcggatgctaagaaaatcctgctgtacagtcagaatgaccgg
aatctggacggctttaaagaccttatccaggccctgaagaccctacaggccaacaccgaa
ggattcaagctgaaggatttcctccacgacaatgagaccctgtccactttccttctgcga
aacgcctccttctcggaacacgccgtgcaccagatcattgaggccaacgtgaacttggaa
aaggtgctggtcaaaggcttcggtgttcacctgagggacatgtgcaaaagcaacggcacc
agtgtggaggactttgtgaccatcgcagacagcgaggtgtccagtctggtccaggagatc
ctctgccggtccccaggctcctggctcaaccaagcagaaagccacttcctcaacaacctg
gacttcctcaaaccaatacggaaagatgtgagggctgaccctgaagctgtccagcaagtg
gctgaggctacagacaaccttctggagagtctggggtccctggccattgagctggccagc
atgaagagttggagcgacctgcgtaacgagatcatcttcctcactgagaacgccacgtcc
tcccccagccacatgtaccaggccgtgtcgcgcatcgtctgtggccaccccgagggcggc
ggactaaagatcaagtccctcaactggtacgaggacagcaactacaaggccctgttcggc
aaccacaacacaaccgacggggaggaacctatctctgcctacgacaacgcatccactcca
tactgcaatgcaatgatgaggaacatggagtccagccccgtatccaggatgatctggcag
gccctgaagcctctgctcatgggcaagatcctatatacccctgccactcccgccacacag
aagatcatccacgaggtgaacaaaacgttccaggagctgggggtcctcagagagctgggg
ggcatgtgggaggaggtgaggcccaaggcctggaccttcatggaaagtagcgaacagatg
gaccttgtaaggaccctactgaagaacaatggcaccgccaggttcttcacctcccaactg
gcgggcacagagtggaccgtggaggatgtctccaacttcctgaccaaacattcagaggac
acacgtccccacggcaccgccttcacctggagggaagtcttcaacgagacggaccaggcc
atcatgagcatatcccgcttcatggagtgtgtaaacctggataagatggagcccgtggcc
aacgaggaaaggatggtcaacaaatccatggcactcctggacgacaggaagttctgggcg
gggatcgtgtttcccgacattgaggccaacagctctgaactgccggccattgtcaactac
aagatccgcatggacattgataacgtggagcgcaccaacaagatcaaagacggatattgg
gaccccggtcctcgtgccgacccctttgaggacctgcgctacatctggggcggcttctct
tacctccaggacatcatcgaacacagcatcatcacggtagtgactggcgccaaggagaag
acgggagtctacatccaacagatgccctacccctgctacgtggatgacatcttcctgcgg
gtgatgagtcgctccatgcccctcttcatgaccctggcctggatgtactctgtggccatc
atcatcaagagtgtggtttacgagaaggaggcgaggctcaaggagaccatgaggatcatg
ggattggacaacggcatcctgtggttcagctggttcatcagcagcctcatccccctgctc
atctccgccagtctgctggtggtgctgctcaagatggggaacctgctgccctacagtgac
cccggtgtcatcttcctgttcctgggttccttcgccgtggtaaccatcatgcagtgcttc
ctcatcagcaccatgtttgcccgtgccaacctggcggcggcctgtgggggtatcatctat
ttcaccctctacctgccctacgtcctctgtgtggcctggcaggactacgtgggctttggg
gcaaaaatagtcgctagcctgctgtccccggtggcctttggctttggctgtgagtacttt
gccctgttcgaagagcagggcatcggcatccaatggaacaacctgttcaacagccccatg
gaggaggacaacttcagcctgaccaccgccatcatcatgatgtactttgactccttcctc
tacatggtgatgacctggtacatcgagtccgtcttccccggtcaatatggtattcccagg
ccctggtacttcctcttcaccaagtcctactggtttggagaaggagacaacaggaagact
gacttcagtcagaacaagagaaggaactgtgaagctgtctgtatagaggaagagccagcc
cacctgaaacctggcgtcttcatagagaacctagtcaaggtgtacccgcacgggaagaag
ctggctgtggacgggctgactctgggcttctacgagggacagatcacttctttcttgggc
cacaacggagcagggaaaaccaccaccatgtcgattctaacgggactgtttccccctacc
tctggcactgcttacatcatgggcaaagacatccgatcggagctgagcgctattcgacag
agtctgggtgtttgtccacagcacaacgttctcttcagcatgctgactgtcgaggagcac
atctggttttacgctcgtctgaagggtctatctgaggaacaggtgaagtctgagatcgaa
cagatcctgatagacactggcctgctgcacaaacgcacttccaagaccagcacactgtcc
ggagggatgcagaggaagctctctgtggctctggcctttgtcggggggtcaaaggttgtg
attctggacgagcccaccgctggggtcgacccctacgcccgccggggcatctgggacctc
ctgctccattatcgtcaaggtcgtaccatcatcctctccacccaccacatggatgaggca
gacatattgggcgaccgcatcgccataatctcccatggcaagctttgctgcgtgggctcc
tccctcttcctgaagaaccagctaggtacaggctactatctgaccctggtcaagaagggc
ccagaaccttccctcaactccttccacaattcctccagcaccgtctccttcactaagaag
gaggaagattgtccctctgagagcagctctgacgcaggccttggcagcgaacacgagagc
gaagcggccaccatcggtaatgccttcgtgccccccgacgtctccctgatctccagcctg
atcttcaagcatgttccagccgcccgtatggtggaagacctgggccacgagctcacttac
atactgccctatggcgcagccaaggacggcgccttcgtggagctcttcaaggacatggac
gaccgtctccccgacctaggcatctccagctacggcgtctccgacaccaccctggaagag
attttcctgaaagtggcagaggacaatggagtagacactgaactcccctctgacggtacc
ctccccatgcccagacgtcgcatacatcatgcttttggtggaggaaatgcctttggtgga
gaccaccagagctgccttagaccccagatagacgacgacaacaatgaccataacgactcg
gacgcatacccagaatccagagagacagacttcctgaacggctcggacggtaaaggctcc
taccaggtgaaaggctggagtctgacgaggcagcagtttgtcgccttgatatggaaaagg
ttcctgtatgctcaacgctccagaaaaggtttctttgctcagattgtgctccctgcggtg
ttcgtttgcgtcgccctggtcttcagtttaatcgtcccgccctttggaaaataccccagt
ctggagctgcagccgtggatgtacgaagaacagtccctcttcatcagtgatgacgcccct
gaagatgccaacacacaacggttattaagtgccctcaccgaaggccctgggtttggaacg
cgttgcatggaaggacagcctataactgactctcactgtacgatgggtgatgaggactgg
accataccggaggttccggagagccttctggaactgttccgcacaggcaactggaccatg
gaggagccgtcccccacatgtgcctgcagctgtgacggccgcaaaaaaatgctccctgag
tgtcctactggagccggaggactgccaccaccccagatgaagatcagcgagacagacacc
ctgcaaaacctgactggcagaaacatctctgactatctagtaaagacctatgcagagatc
attgggaaaagtttgaacaacaagatctttgtgaatgaatttaggtacggtggcttctca
ttgggcgcaaggagcactcaggtcctccccccagctggcgaggttgatgacgctatcgct
cgagtgaggaagatttttgaattggagaagggtgctgccgcggaccgattcctggcgagc
ttgtctagcttcatcaatggtctggacaccaagaataatgtcaagatttggttcaacaac
aaggggtggcacagcatgggagcctttctcaacgtgatgaacaacggcatcctgcgcgcc
aacctgccccctggccaggaccccagcaagtttggcatccgcgccttcaaccacccgctc
aacctcaccaaggagcagctgtcccaggtggcactgatgaccacctcagtggacgtgctg
gtgtccatctgcgtgatcttcgccatgtccttcgtcccagccagcttcgtagtcttcctc
atccaggagagagtgagcaaggccaagcacatgcagttcatcagcggcgtgcagcccctg
ctctactggacggccaacttcatctgggatatgtgtaactacatcgtcccggcgacgctc
gtcatcatcatctttgtctgcttccaacaaaaagcctacgtgtcgtccaccaacctgcca
gtgctggccctgctgctgctcctctatggctggtctatcactcctctgatgtacccggcg
tccttcttctttaagatccccagcacggcctacgtggtgctcacctccgtcaacatcctc
atcggcatcaacggcagcatctccacctttgtcatggagctctttgggaacaacgagatt
ggaggtatcaatgacatcctgaagaacgttttgctgatatttcctcacttctgtttgggt
cgaggcctcatcgacatggtgaagaaccaggccatggccgacgctctggaaagattcggt
gagaatcgcttccgatcccctctggaatgggacatggtgggcaagaacctgtttgccatg
gccgtggaaggagtggtcttcttcatcatcaccgtcctcatccagtaccgcttctgcatc
aaacccattaacctgcacaccaagctccctccggtaggcgaggaggacgaggacgttgcc
agagagaggcagaggatcgtcaacggactgggacacggagacatcctggagctccgacag
ctcaccaaggtctacaaaaggaagcagaagccggcggtggaccgcctgtgtgtgggcatc
cctcctggagagtgctttggcctcttgggtgtgaacggagctggaaagaccaccaccttc
aaaatgctgacaggagactccatagtcaccagtggagaggctttcctggccggaaaaagt
atactgcgggagatagacgaggtgcaccagaacatgggctactgccctcagtttgacgcc
atcaacgacctgctgacaggaagagagcacctggagttctacgccgtcctgcgcggcgtg
cccgagaaggaagtgtgcgaagttgccgaatggggcatccgtaagctgggcctagtaaag
tatgtggacaaggcagcgggaagctacagcggaggaaacatgaggaaactctccaccgcc
atggccctgataggaggaccacccgtcgtgttcctggacgagcccaccactgggatggac
cccaaagcacgcagggccttatggaactgcatccacagcgtcatcaaggagggacgctcc
gtggtgctcacctcgcacagtatggaggaatgtgaggccctgtgcaccagaatggccatt
atggtcaatggcaggttccgctgcttggggagcgttcagcacctaaagaacaggttcgga
gacggctacaccatcattctgcgtgtggctgggccggaccctgacctgccgccggtgatg
aagttcattgagagtaagctgcctggcagcaccctgaaggagaagcacaggaacatgctg
cagtaccagctgtcctcctcactcacctccctggcacacatcttcagcatcctggccaag
aacaaggaccttcttcggatagaggactactccgtgtcgcagaccacactggaccaggtt
tttgtgaactttgccaaggaccagagtgacgattaccactcaaaagacaattcagtaaag
cgcaaagaggcggtggtggacattaccccgctcagctcacggcaggctgaagagaagcta
gccgaggagaggctaaaggagagcttggtgtga
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integrated database retrieval system
