Salvelinus namaycush (lake trout): 120062112
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Entry
120062112 CDS
T07522
Name
(RefSeq) homeobox protein CDX-1-like
KO
K09312
homeobox protein CDX1/4
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120062112
Transcription factors [BR:
snh03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain ANTP: HOXL
120062112
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Caudal_act
Homeodomain
Homeobox_KN
DUF7255
DUF7645
Motif
Other DBs
NCBI-GeneID:
120062112
NCBI-ProteinID:
XP_038867850
UniProt:
A0A8U1F1G3
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Position
Sna17:15610926..15613779
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AA seq
271 aa
AA seq
DB search
MYVGYLLDKEGSMYHQGPVRRSGINIPPQNFVSTPQYSDFTGYHHVPNMDTHTQSSGAWG
APYVAPREDWGAYSLGPPNTIPTPMNNSSPGQASYCSPEYNPMHAPGSAVLQPPPDNISV
AQLSPDRERRNSSYQWMSKTVQSSSTGKTRTKEKYRVVYTDHQRLELEKEFHFNRYITIR
RKSELAGNLGLSERQVKIWFQNRRAKERKLIKKKMGSDGSGGSVHSDPGSVSPLPVPGSL
SPSDIHGSLYPPPGMNNLPSIRNIQQVTVTQ
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgtatgtgggatacctcttggataaagaaggcagcatgtatcaccaaggacctgtaaga
cgatcgggaatcaacatcccaccacagaactttgtttccacgccacaatattccgacttt
actggataccatcatgtgccaaacatggatactcatacacagtcttcgggggcttgggga
gctccttatgtcgcaccgagggaggactggggcgcctatagtctggggcctccaaacact
attcctacgcccatgaacaactcctcaccgggacaagcttcctattgctcacctgaatac
aatcccatgcacgcgccagggtcagcagtattgcaaccacctccagataatatttctgtt
gctcaactttccccggatagagaaaggcgcaattcttcttaccagtggatgagcaaaacg
gtacaatcatcttctacgggcaaaacaagaacgaaggagaaatacagagtggtttacacc
gatcaccagagactggaactggagaaggaattccattttaatcgttacatcactatcaga
agaaagtcagaacttgcggggaaccttggcctttcagaacgacaggtgaagatctggttt
caaaatcgcagagccaaggagaggaaattaatcaaaaagaaaatgggatctgatggcagt
ggaggatcagtgcacagtgacccgggttcagtgagtcctctgcccgtaccaggctcactc
agtccgtcggatattcacggctctctctacccaccccccggaatgaacaacttgccatct
attaggaacatacagcaagttactgtcactcagtag
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