Salvelinus namaycush (lake trout): 120062261
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Entry
120062261 CDS
T07522
Symbol
pcdh12
Name
(RefSeq) protocadherin-12
KO
K16499
protocadherin delta 2
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120062261 (pcdh12)
Cell adhesion molecules [BR:
snh04515
]
Cadherins
Protocadherins
120062261 (pcdh12)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
TMEM154
DUF5527
Motif
Other DBs
NCBI-GeneID:
120062261
NCBI-ProteinID:
XP_038868019
UniProt:
A0A8U1H0M8
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Position
Sna17:8098792..8117734
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AA seq
1186 aa
AA seq
DB search
MLDRTVISHTVMLLALLLVLWLSSGAQSSDPAPLTVMYQVWEEQPVGTRVGRLVDDLRQR
GETGVLEDFQVVEHGQALPFSIGVRDGTVATLGQLDREELCRGSDLCELAFSVLYRKGGV
IHFLRVRVEVMDLNDHSPTFPSSQQEVEISEMATLRMRIPLDRAVDPDAGPNGLQTYSLS
VNQHFALDVRSAVDGPKQAELVVIKELDREVHSSFELTLVAWDKGNPPRAGSTLVRVNVL
DSNDNSPMFEDSTPTVELAEDTARGTSVINLKATDPDQGANGEVEYSLSKHAPPEVQKLF
SIHPQSGVVTLKGPLDYEAKHFYEVDIQARDLGPNAIPSHCKLHIKLRDVNDNAPRIHVT
WTPPDSPVATVLEGAPEDTFLALVMVSDADSGDNGNVHAHIQHGSGHFRLKKIHGDNYMI
VTNGTLDREKVMEYNLTLLAQDYGDPPLSCVRHLVVHVLDENDNAPVFSKSHYRASFKEN
NTVGLQVLKVEANDVDIELSGRVSFSIRESNELGPPTASFAIHPTSGVVSAQQSLDYEDS
PTYSFIVEAIDHGHPPLTSTATVLIEIQDVNDNYPVIKEPMPKKGIAFVSVPVNEEKGEI
VTELGDGAEEGSTDPHTGRSVQNGFMGFLATTIKATDPDSGLNGRLSYMITDGNPTGLFR
LNDTTGQLYVNTTNATELIGKTFKVDIAVSDKGSPRLLTKATLEVAFINLRDHLKNSAPG
NHGQLSFTMMVVICLGASCILLLLAVALVTTFCRPRKRDNHSYNCRMAESTYTSHPRRPQ
KNIRKTDIQLVPVLRGRREDPPEDDEAQPLSTMLLVVEEQNTERQYSVANSMNPTVHSQA
YPEGGSTLPVSHSRTLRKPGSIELDGTLPRTPATPYRTLRKARIPSSSSSLYQTSTLRRH
GNSEIQVSPDVEVPETLSQVATLRRPKNTDTRSGLDAEDHRRMLRNLVRLSMAAFGENSI
ELSAASPEVQQVSQLLSLLHQGQLQPRPNFRGNKFSQRAGRSYAQDTDWQSTKDSGHGES
EAGDMDWDMGRDSPVDPLLEEGLNNLLNNPDDVFADIEDPAWMSRLSLPLTADYHENVFV
PNGPPSPETHCSPDTLDSASFSTFGKKPEDGSLGGALISEVNTLFNMLLTQRGDSQPRLS
PDVLYRLSATYRRSLGLEGDTAPAGGANIQRNSVNPEKRSTLAQCP
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgctggacaggacagtaatatctcacacagtcatgctgctggctctactgctggttctg
tggcttagttctggggcccagtcttcagacccggccccattaactgtcatgtaccaagtc
tgggaggagcagcctgtgggcaccagggtcggccgtctggtcgatgacctgcgccagaga
ggcgagaccggggtactggaggatttccaggtcgtggagcatggtcaagccctgcctttc
tccattggagtaagagatggaactgtcgccaccctaggccagctggaccgggaggagctg
tgtcgaggctcggacctgtgtgagctggccttcagtgtcctctacaggaaaggtggtgtt
atccacttcctgagggtgcgggtggaggtgatggacctgaatgaccacagcccaactttt
cccagcagccagcaggaggtggaaatctctgagatggccacattgaggatgcggatcccc
ctggaccgagcggtggacccggacgccggcccgaatggtctgcagacctactcgctgtcc
gtcaaccagcattttgccctggatgtaaggagtgctgtggatgggccaaagcaggcagag
ctggtggtgatcaaggagctggacagggaggtgcattcctccttcgagctgactctggtg
gcatgggacaaggggaatcctcccagggcaggcagtactctggtccgggtcaacgtcttg
gactctaacgacaacagccccatgtttgaggatagcacccccactgtggaactagccgag
gatacagctcgtgggactagcgtcatcaacctcaaggccacggaccctgaccaaggggcc
aacggggaggttgagtactcactaagcaagcatgctccacctgaggtgcagaagcttttc
agtatccacccccagagtggagtagtgactttaaaaggcccactggactatgaagccaaa
cacttttatgaggtggacatccaggctcgagatcttgggcccaacgccatcccctctcat
tgtaaactacacatcaagctgagggatgtcaatgataatgcaccaaggatccacgtcact
tggacaccccctgattccccagtggcaactgttttagaaggcgcaccagaggacacgttc
cttgcactggtgatggtctctgatgcagactccggggacaacgggaatgtgcacgcccac
atccagcatggatcaggccacttccgtctcaagaaaatccatggcgacaattacatgatc
gtaaccaatggcaccctggatcgggaaaaggtcatggagtataatctcacgttacttgcc
caggattacggtgaccctccactgtcatgtgttagacacctagttgtccatgtgttggat
gagaatgacaatgcccctgtgttctccaagtcccactacagggcttccttcaaggagaac
aataccgtggggctccaggtcctcaaggtagaagccaatgatgtggatattgagctcagc
ggtagggtgtccttctccatccgagagtccaatgaactgggacctcctacggcatctttc
gccatccaccccaccagtggtgtagtcagcgcccagcagtcattggactatgaggactcg
cccacatactccttcattgtggaggccatagaccatgggcatccacccctcaccagcacc
gccacggtactcatcgagatccaggatgtcaacgacaactaccccgtcatcaaggagccg
atgccaaagaaaggcatagcctttgtgagtgtcccggtcaacgaagagaagggggagata
gtgacagaactaggggatggtgctgaagaaggctccaccgatcctcatactggtcgctct
gtccaaaatggatttatgggattcctggccactaccatcaaggcaactgatccagactct
ggcctgaatggaagactcagctacatgatcacagatggaaaccccacaggactattcaga
ctcaatgacaccaccggacaactgtatgttaacacgaccaatgctacagagctcattggg
aaaacttttaaagtggatattgctgtatcggacaagggttctccaaggctattgacaaag
gccaccttagaggtggctttcatcaacttgcgggaccatctgaagaactcagcccctggt
aaccatggtcagctgagtttcaccatgatggtggtcatctgccttggggccagctgcatc
ctgcttctcctggctgttgccttggtgaccaccttctgtcgccccaggaaaagagacaac
cattcctacaactgcaggatggccgagtccacctacacgagccaccctcgccgcccgcag
aaaaacatcaggaagacagacatccagctggtgccagtcctgaggggacgaagggaggac
cctccagaagatgacgaagcccagcccctttccaccatgctcctggtggttgaagagcaa
aacacagaaaggcagtacagcgttgccaactccatgaacccaacagtccactcccaggcc
tacccagaggggggatcaacgctaccagtctcccattctagaacactcaggaaacctggg
agcatcgagctggacggcactcttcctcggaccccggccactccttaccgaaccctgcgt
aaggcaagaataccttcatcgtcctcctcactgtatcagaccagtaccctgaggcgacat
gggaactctgagatccaggttagccctgacgttgaagtgccagaaacattgtcccaggtg
gcaacacttaggaggcccaagaacacagataccagaagtggacttgacgctgaagaccac
agacggatgctgaggaatctggtccgtctctccatggctgccttcggagagaactccatt
gagttgtctgctgcctctcccgaagtgcagcaggtttctcagctcctctccctgctccac
cagggccagctgcagccaagaccaaacttccgaggcaacaagttctcccagcgcgctggc
aggtcttacgctcaggacactgattggcagagcaccaaggacagcggtcatggtgagagt
gaggccggagacatggactgggacatgggccgagactcccccgtcgacccgctactggag
gaggggcttaataacctgctcaacaaccctgatgacgtctttgctgacatagaggaccct
gcgtggatgtcccgcctttccctccccctaactgccgactaccacgagaacgtttttgtt
cccaatgggccaccgtcccctgaaacccattgctccccagacacccttgactctgcctcc
ttctccaccttcggtaagaagccggaggatggctcactgggcggggccttgatctccgag
gtcaacactttgtttaatatgctcctgacccagagaggcgactcccagccccgcctctcg
ccagacgtgctctacagactgtccgccacctaccggcgctcgctggggctggaaggagat
accgccccagcagggggtgccaacatacaaaggaactctgtgaaccccgaaaagaggtcc
accctggctcaatgcccttag
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