Salvelinus namaycush (lake trout): 120062284
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Entry
120062284 CDS
T07522
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03020
RNA polymerase
snh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120062284
09124 Replication and repair
03420 Nucleotide excision repair
120062284
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120062284
03400 DNA repair and recombination proteins [BR:
snh03400
]
120062284
Enzymes [BR:
snh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120062284
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120062284
DNA repair and recombination proteins [BR:
snh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120062284
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
120062284
NCBI-ProteinID:
XP_038868050
UniProt:
A0A8U0QUE2
LinkDB
All DBs
Position
Sna17:10432875..10448669
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDIQYDEDEDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEDPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSSIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYSHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIAAYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCSGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPEIDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKITSQIFLGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaccaagatgaagacatccaatacgatgaggatgaggatgaaatcacccccgat
ttatggcaggaagcttgctggattgttatcagttcctattttgatgagaagggcctggtg
cgacagcagctggactcctttgacgagttcatccagatgtctgtgcagaggatcgtggag
gatgccccgcccattgacctgcaggctgaggcccagcacacctctggagaggtggaggat
ccgccacgctacttgctgaagtttgagcagatctacctttcaaaacccactcactgggaa
agagatggagccccgtcgcctatgatgcccaacgaggctagactcaggaaccttacgtac
tctgctccactgtacgtggacatcaccaagaccatcatcaaggagggtgaggaccagctg
cagacccagcaccagaagaccttcatcggcaagatcccgatcatgctgcgctccacctac
tgcctgctcagcggcctgacagaccgtgatctgtgtgagctcaacgagtgcccactggac
cccgggggatacttcatcatcaatgggtcagagaaggtcctgattgcccaggagaagatg
gccacgaacacagtgtacgtcttcgccaagaaggactcaaagtacgcgtacacaggggag
tgccgctcctgcctggaaaactcctcgcgccccaccagctccatctgggtcagcatgatg
gccaggggaggacagggggtgaagaaaagtgccattggtcagaggatcgtgtccactctg
ccctacatcagacaggaggtgcccatcatcatagtgttccgagccctgggctttgtgtcc
gacagagacatcctggagcacataatctacgactttgacgaccctgagatgatggagatg
gtcaagccatccctggacgaggcctttgtgatccaggagcagaacgtggcgctgaacttc
atcggctctcgtggtgccaagcccggtgtcaccaaggagcggaggatcaagtacgccaag
gaggtgctgcagaaagaggtgctcccccacgtcggagtcagtgacttctgtgagaccaag
aaggcctatttcttagggtacatggtccacagactcctattagcggccctgggcagaaga
gagctggacgaccgggatcactatggcaacaagagactagacttggctgggccgctgttg
gctttcctgttccgtggaatgttcaagaacctgctgaaagagatccgcatctacgcccaa
aagtttattgaccgagggaaagacttcaacctggagttggccatcaagacacgaatcatc
tccgacggcctgaagtactctctggccacggggaactggggtgacgtcaagaaggcccat
caggccagagctggagtgtcccaggtgttgaaccgcttgaccttcgcctccaccctctct
caccttcgtcgtgtgaactcccccatcggtagggacggcaagctagccaagccccggcag
cttcacaacacgctgtggggcatggtgtgccctgctgagaccccggagggtcatgctgta
ggcctagtgaagaacctggccctcatggcctacatctctgtgggctcccagccctctccc
atcctggagttcttggaggagtggagcatggagaacctggaggagatctcaccggcagcc
atagcggatgccacaaagatctttgtcaatggctgttgggtgggcatacacaaggaccca
gagcagctgatgaacacactgaggaaactgaggaggcagatggacatcattgtgtctgag
gtgtccatgatcagagacatccgagagagggagatccgcatctacacggacgccgggagg
atctgtcgtcctctgctgatcgtagagaaacagaagctgctgctgaagaggagacacatt
gaccagctgaaggagagggagtacaacaactacagttggcaggacctggtggccagcggc
gtggtggagtacatcgacaccctggaggaggagactgtaatgctggccatgacccctgac
gacctccaggagaagggcgtggcctactgttcgacatacagccactgtgagatccacccc
tctatgatcctgggagtctgtgcttccatcatccccttccccgatcacaaccagtctccc
agaaacacgtaccagtctgctatgggtaaacaagccatgggtgtgtacatcaccaacttc
cacgtgcggatggacaccctggcccacgtgctctactaccctcaaaaacccttagtcacc
acccgctctatggagtacctgcgtttcagagagctccctgcaggtatcaactcgattgtg
gctattgcggcgtacactggctacaaccaggaggactctgtcatcatgaaccgctctgca
gtggaccgtggattcttcaggtctgtgttctaccgctcctacaaagaacaggagtcaaag
aaaggtttcgatcaggaggaaatctttgagaaacccacacgcgaaacctgttcgggcatg
aggcacgccatttacgacaagctggatgacgacggcttgatagctcccggcgtgcgtgtc
tccggcgaggacgttatcatcggcaagacggtgaccctgccggagatcgacgacgagctg
gacagcaccaaccggcgctacaccaagagggactgcagcaccttcctccgcaccagcgag
acgggcatcgtggaccaagtcatggtcaccctcaaccaggagggctacaagttctgcaag
attagggttcgctccgttcgtatcccccagatcggtgacaagtttgccagtcgacacggg
cagaagggtacctgtggtattcagtacagacaggaggacatgcccttcacttgcgaggga
attaccccagacatcatcatcaatccccacgccatcccctctcgtatgacagtcggccat
ttgattgagtgcctgcagggcaaggtttcagccaacaaaggggagattggtgacgccacg
cctttcaacgatgcggtcaacgtgcagaaagtctccaacctgctgtctgaatacggatat
cacctgaggggcaacgaggtgttgtacaacggtttcaccggccgtaagattacctctcag
atcttcctcgggcccacatactaccaacgcctgaagcacatggtggacgacaagatccac
tctcgggctcgaggcccagtccagatcctcaacagacagcccatggagggcagatcacgt
gacggaggtcttcgttttggggagatggagcgcgattgtcagatagcccacggcgcggct
cagttcctgcgtgagaggctgttcgaggcgtccgacccctaccaggtccacgtctgcaac
ctctgtggcctcatggccatcgccaacacccgcacgcacacctacgagtgcaggggctgt
cgcaacaaaacacagatctccctggtcagaatgccgtacgcctgcaagctgctcttccag
gagctcatgtccatgagtatcgcccctcgtatgatgaccagttag
DBGET
integrated database retrieval system
