Salvelinus namaycush (lake trout): 120062294
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Entry
120062294 CDS
T07522
Name
(RefSeq) FACT complex subunit SSRP1-like isoform X1
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120062294
03036 Chromosome and associated proteins [BR:
snh03036
]
120062294
Transcription factors [BR:
snh03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
120062294
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
120062294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
Rttp106-like_middle
SSrecog
POB3_N
HMG_box
SSRP1_C
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
120062294
NCBI-ProteinID:
XP_038868073
UniProt:
A0A8U1F1J9
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Position
Sna17:11056413..11068358
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AA seq
710 aa
AA seq
DB search
MGDTLEFNEIYQESKGSWNDGRLRFSKQNLVYKSSKTGKVDNIPAAELSQATWRRVCLGH
GIKLATSTGHVYKYDGFRDTDYERISEFFKANYKVELTEKDMCVKGWNWGTAKFSGPLLS
FDVNDSSVFEIPLASVSQCATGKNEVTLEFHQNDDAEVSLMEVRFYVPPGPADEGADPVE
AFAANVLSKADVIQATGDAVCVFKELQCLTPRGRYDILIYPAFLHLHGKTFDYKIPYTTV
LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKEEELCLTLNMSEEEVEKRYE
GKLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGNTPGAQCITCSYKAQSGLLYPLERG
FIYVHKPPVHLRFEEISCVNFARGTTTTRSFDFEVETKQGNQFTFSSIEREEYGKLFDFV
NAKKLNIKNRGFKEKKGMKSKNNEFSDSDEDQHDAYLERMKAEGKIREEGDGSNDSDEET
DESFNPGEESDIAEEYDSNASESDSGSGGDGSDDEGKKNKPAKKAKVVKERKPRKEKKQK
DTNAPKRPMSSYMLWLNSSREHIKSENPGISITEISKKAGEMWKQIGKDDKEGWDRKAEE
ARKNYEKAMKEYRESGGGSSTPAKKESKKAGGKEDKKAGGKKRKSDGGEKEKEQGGNDSF
KSREFISSEESSSEGERKKAKKAKGKPKGKESEEEEEVMTTPPSSEVDSD
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgggagacacgcttgagttcaacgagatctaccaggaatccaaggggtcctggaacgac
ggtcgtctgaggttcagtaagcagaatctggtgtataagagcagtaagactgggaaggtg
gacaacattccggcagcagagctgtctcaggccacgtggaggcgtgtatgcctgggacac
ggcatcaagctggccaccagcaccggacatgtctacaaatatgacggcttcagagacacg
gattacgagaggatctcggagttcttcaaggccaactacaaggtggagctgacagagaag
gacatgtgtgtgaagggctggaactggggcactgctaaattctctggtccattgttgtcg
tttgatgtgaatgacagctccgtgtttgagatccccctggccagcgtgtcccagtgtgcc
acagggaagaacgaggtgacgctggagttccaccagaacgatgacgctgaggtctctctc
atggaggtccgtttctacgtcccccccggccccgcagacgagggggcagaccccgtggag
gcgtttgccgcgaatgtgctgtctaaggcagatgtgatccaggctacaggagatgctgtg
tgtgtcttcaaagagctgcagtgcctcacacccaggggcaggtatgatatccttatctac
cccgccttcctccacctccatggtaagacgtttgactacaagatcccctacaccactgtg
ctgcgtctcttcctgctaccacacaaggatcagagacagatgttctttgtgatcagtctg
gacccgcccatcaagcagggacagacccgttaccacttcctcatcctgctcttctctaag
gaggaggagctctgcctcaccctcaacatgagcgaggaggaggtggagaagcgttatgaa
gggaagctcactaagaacatgtccggttctctctatgagatggtcagcagagtgatgaag
gctctggtcaacaggaagatcaccgtgcccggaaacttccaggggaacaccccaggggcc
cagtgtataacatgttcctacaaggcccagtccggtttgctctacccgctggagaggggt
ttcatctacgtgcacaagccgcccgtccacctgcgcttcgaggagatctcctgtgtcaac
ttcgccagaggcaccaccaccacgcgctcctttgacttcgaggtggagaccaagcagggg
aaccagttcaccttcagcagcatagagagggaggagtacgggaagctgtttgactttgta
aacgccaagaaactcaacatcaagaatagaggattcaaggagaagaagggcatgaagagt
aagaacaacgagtttagtgactccgatgaagaccagcacgatgcctacctggagaggatg
aaggctgagggcaagatcagagaggagggagacggcagcaacgactcggacgaagagacc
gatgagtctttcaaccctggggaggagagtgatattgctgaggagtatgacagtaacgcg
tcggagagcgacagcggcagcggaggtgatggcagcgatgacgagggaaagaagaataaa
cctgcgaagaaggccaaggtagtgaaggagaggaagccacgcaaagagaagaagcagaag
gacaccaacgcccccaagaggccgatgagttcctacatgctgtggctcaactctagccgc
gaacacatcaagtcggaaaaccccggaatctcaatcacggagatctccaagaaggccgga
gagatgtggaaacagatagggaaggacgacaaagaggggtgggacaggaaagcagaggag
gctaggaagaactatgagaaagccatgaaggaataccgagagagcggtggaggctcctct
acacccgccaagaaggagagcaagaaggcaggaggtaaggaagacaagaaggcaggaggc
aagaagaggaagtctgacggaggagagaaagaaaaggagcaaggagggaacgacagtttt
aagagccgagagtttatctccagcgaggagagttcgtctgagggtgaacggaagaaggca
aagaaagccaaaggcaaacccaagggcaaggagtctgaggaagaggaggaagtgatgacc
acgccccccagctctgaggtggactctgactaa
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