Salvelinus namaycush (lake trout): 120062395
Help
Entry
120062395 CDS
T07522
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120062395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120062395
Enzymes [BR:
snh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
120062395
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120062395
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120062395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_LRWD1
Motif
Other DBs
NCBI-GeneID:
120062395
NCBI-ProteinID:
XP_038868269
UniProt:
A0A8U1F2H7
LinkDB
All DBs
Position
Sna17:18696256..18720130
Genome browser
AA seq
572 aa
AA seq
DB search
MPKEKYDPPDPRRMYTIMSTEEAANGKKSYWPELEITGNVRSLSPSLWTLTHLTALHIAD
NCLSRIPPDIAKLHNLLYLDLSSNKIRSLPAELGNMVSLRELLLNNNQLRVLPFELGKLF
QLQTLGLKGNPLAQEIMSLYQEHDGTRKLLNYLLDNLAGSIKCTPTEQPPSRSWIALQEP
DQTRPSALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKSIMQEIMNCSADIISLQE
VETEQYYQYFLPELKEQGYEGFFSPKSRARTMHESDRKHVDGCAVFYRTEKFSVVQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLEVRKEMMEESSGKSLHGMEKQLLLVANA
HMHWDPEYSDVKLVQTMMFLSEVKNIVDKATRSLKLSSVSGETNSIPLVLCADLNSLPDS
GVVEYLSQGGVDCTHKDFKELRYLDSLTNFNCNGKNGNSTSNSRITHGFKLRSAYEDSLM
PYTNYTFDFKGVIDYIFYSKPQLNVLGILGPLDSNWLHENNISGCPHPHIPSDHFSLFTQ
LELLLPSTLPQGQVNNQVNNQVNGIHLPGGRR
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaagaaaaatatgacccgccagaccccaggcggatgtacaccatcatgtcaact
gaggaggcagccaatggaaagaagtcttactggcctgagctggaaatcactggtaatgtc
agaagcctgagcccgtctctgtggactctgacccacctcactgccctacacatcgctgac
aactgtctgtcacgcatcccacctgacattgccaaactacacaacctgttgtacctggat
ctatcgtccaataagatcaggagcctgccggcagagctcggcaacatggtgtctctcagg
gaactgcttttaaataacaaccagttgcgggttctgccatttgaattggggaaactgttt
cagttacaaacactggggttgaaaggaaacccacttgcacaagaaatcatgagcctgtac
caggagcatgatggcaccaggaaactgctcaactacctgctggacaatctggcaggttca
atcaaatgcacccccacagagcagcccccgtcccggtcgtggatcgcactccaggagcct
gaccagacgaggccttctgcattgttctctgttatgtgctacaacgtgctgtgtgataag
tacgccacacgccagctctacggctactgcccctcctgggccctcaactgggagtacagg
aagaagtccatcatgcaggagatcatgaactgcagcgctgacatcatcagcctacaggaa
gtggagacagagcagtactaccagtacttcctgccagagctgaaggagcagggctatgag
ggcttcttcagccccaagtctcgagccagaaccatgcacgagtcagaccgcaaacatgtg
gacggttgcgcagtattctacaggacagaaaagttcagcgtggtgcagaaacacacggtg
gagtttaaccagctagccatggctaactctgagggctctgaggccatgctcaacagggtc
atgaccaaggacaacatcggagtggccgtactgctggaggtccgcaaggagatgatggag
gaatcctcggggaagtctctgcacggcatggagaaacagctcctactggtggccaatgcc
cacatgcactgggacccggagtactctgacgtcaagctggtccagaccatgatgttcctg
tctgaggtgaagaacattgtggacaaggccacgcgcagcctcaaactctcctctgtctct
ggggagaccaacagcatccctctagtgctttgtgctgacctcaactctctaccagactct
ggcgtggtggagtacctgagtcaaggtggagtggactgcacccacaaggacttcaaggag
ctgcgctacctcgacagcctcaccaattttaactgcaacggcaagaacgggaactccacg
tccaactccaggatcacccacggcttcaagctgaggagcgcctacgaggacagcctgatg
ccttacaccaactacaccttcgacttcaagggtgtgattgactacatcttctactccaag
cctcagctcaacgtgttgggcatcctgggtcccctggactccaactggctccatgagaac
aatatcagcggctgtccgcacccccacatcccctctgaccacttctccctgttcacccaa
ctggagctgctgctgcccagcaccctgccccagggccaggtcaacaaccaggtcaacaac
caggtcaacggcatccacctgcctggaggccgcaggtag
DBGET
integrated database retrieval system
