Salvelinus namaycush (lake trout): 120062414
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Entry
120062414 CDS
T07522
Name
(RefSeq) cytoplasmic FMR1-interacting protein 2-like
KO
K05749
cytoplasmic FMR1 interacting protein
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04810
Regulation of actin cytoskeleton
snh05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
120062414
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
120062414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120062414
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
120062414
Factors involved in mRNA localization
Other mRNA localization factors
120062414
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FragX_IP
CYRIA-B_Rac1-bd
Cypovirus_WIV_4
zf-CW
Spore_SspJ
Motif
Other DBs
NCBI-GeneID:
120062414
NCBI-ProteinID:
XP_038868307
UniProt:
A0A8U1H458
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All DBs
Position
Sna17:complement(20531706..20596034)
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AA seq
1252 aa
AA seq
DB search
MTTHVTLEDALSNVDLLEELPLPDQQPCIEPPPSSIMYQANFDTNFEDRNAFVTGIARYI
EQATVHSSMNEMLEEGHEYAVMLYTWRSCSRAIPQVKCNEQPNRVEIYEKTVEVLEPEVT
KLMKFMYFQRKAIERFCGEVKRLCHAERRKDFVSEAYLLTLGKFINMFAVLDELKNMKCS
VKNDHSAYKRAAQFLRKMADPQSIQESQNLSMFLANHNRITQCLQQQLEVIPGYEELLAD
IVNISVDYYENKMYLTPSEKHMLLKVMGFGLYLMDGNVSNIYKLDAKKRINLGKIDKFFK
LQVVPLFGDMQIELSRYIETSAHYEENKSKWTCTQSSISPQYNLCEQMVQIRDDHIRFIS
ELARYSNSEVVTGSGLDSHKSDEEYRELFDLALRGLQLLSKWSTHVMEVYSWKLVHPTDK
FCNKDCPGTAEEYERATRYNYTSEEKFALVEVIAMIKGLQVLMGRMESVFNQAIRNTIYA
ALQDFAQMTLREPLRQAVRKKKNVLISVLQAIRKTICDWEGAREPPNDPCLRGEKDPKGG
FDIKVPRRAVGPSSTQLYMVRTMLESLIADKSGSKKTLRSSLDGPIVLAIEDFHKHSFFF
THLLNFSEALQHCCDLSQLWFREFFLELTMGRRIQFPIEMSMPWILTDHILETKEPSMME
YVLYPLDLYNDSGYYALTKFKKQFLYDEIEAEVNLCFDQFVYKLADQIFAYYKAMSGSVL
LDKRFRAECKNYGVIIPYPPSNRYETLLKQRHVQLLGRSIDLNRLVTQRISAAMYKSLDQ
AISRFESEDLTSIVELEWLMDINRLTHRLLSKHMTLDSFDAMFREANHNVSAPYGRITLH
VFWELNFDFLPNYCYNGSTNRFVRTAIPFTQEPQRDKPANVQPYYLYGSKPLNIAYSHIY
SSYRNFVGPPHFKTICRLLGYQGIAVVMEELLKIVKSLLQGTILQYVKTLIEVMPKICRL
PRHEYGSPGILEFFHHQLKDIIEYAELKTDVFQSLREVGNAILFCLLIEQALSQEEVCDL
LHAAPFQNILPRVYIKEGERLEVRMKRLEAKYAPLHLVPLIERLGTPQQIAIAREGDLLT
KERLCCGLSMFEVILTRIRSFLQDAVWRGPPPTNGVMHVDECMEFHRLWSAMQFVYCIPV
GTHEFTAEQCFGDGLNWAGCSIIVLLGQQRRFDLFDFCYHLLKVQRQDGKDEIIKNVPLK
KMADRIRKYQILNNEIFAILNKYMKAVETDSSTVEHVRCFQPPIHQSLATTC
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atgacgacccacgtgaccctggaggatgctctgtctaacgtggacctgttggaggagctg
cctctccctgaccagcagccctgcatcgaacctccgccttcatccatcatgtaccaggct
aacttcgataccaactttgaggacaggaatgcgtttgtgacggggatagctcgctacatc
gagcaggcaactgtccactctagcatgaatgagatgctggaggaaggccatgagtatgct
gtcatgctctacacctggagaagctgctcaagagctataccacaggtgaagtgtaatgag
cagcccaacagagtggagatctatgagaagactgtggaggtgctggaaccagaggtcacc
aagctcatgaagttcatgtactttcagcgtaaggccatcgagcgtttctgtggggaggtg
aagcgtctgtgccacgctgagcggaggaaagactttgtctctgaagcctaccttctcacc
ctgggcaagttcatcaacatgttcgctgtgctcgacgaactcaagaacatgaagtgcagc
gtcaagaacgaccactctgcctataaaagggcggctcagttcctgaggaagatggccgac
cctcagtccatccaggagtcacagaacctctctatgttcctagccaatcacaacaggatt
acgcagtgtctgcagcagcagctggaggtgattcctggctatgaggagttgttagcagac
attgtcaacatcagtgttgattactatgagaacaagatgtacttgacgcccagcgagaaa
cacatgctgctcaaggtgatgggttttggtctctatctgatggacggtaacgtcagtaac
atctacaaactagacgccaagaagaggatcaacctgggaaagatcgacaagttcttcaag
ctgcaggtggtgcctctgtttggagacatgcagatagaactatcacgttacatagagacc
agcgcccactacgaggagaacaagtccaagtggacgtgtacccagagctccatctctccc
cagtacaacctgtgtgagcagatggttcagattcgagacgaccacatccggttcatctct
gagctggctcgctacagtaacagtgaggtggtgaccgggtcaggcctggacagtcacaag
tcagacgaggagtacagggaactgtttgacctggcactcagagggttacagctgctgtcc
aagtggagcacacacgtcatggaagtgtactcgtggaagttggtccacccgacagataag
ttctgtaacaaggactgtcctggcacagcggaggagtatgagagagctacacgttacaac
tacacctcagaggagaagtttgccctggtcgaggtcatcgccatgatcaagggactgcag
gtgttgatgggtcgtatggagagcgtattcaaccaggccataaggaacaccatctatgca
gccctgcaggactttgctcagatgaccctcagagagcctctacgtcaggccgtacgcaag
aagaagaacgttctcatcagtgtcctgcaggcgatccgtaagaccatctgtgactgggag
ggggctcgggagcctcccaatgacccctgtctcaggggggagaaggaccccaagggaggg
ttcgacatcaaggtgccccgcagagctgtgggaccctcgagcacacagctgtacatggtc
cgtaccatgctggagtcgttgatagccgataagagtggttctaagaagactctacgcagc
agtctggatggacccatagtactggctatagaagacttccacaaacactccttcttcttc
acacacctgctcaacttcagcgaggcgctgcagcactgctgtgacctgtctcagctgtgg
ttcagagagttcttcctggagctgaccatgggtcgcaggatccagttccccatcgagatg
tccatgccctggatcctcacagaccacatactggagaccaaggagccatccatgatggag
tatgtgttgtaccctctggacctctacaatgacagtggctactacgctctgaccaagttc
aagaaacagttcctctacgatgagatagaggctgaggtgaacctgtgcttcgatcagttt
gtctacaagctggctgaccagatatttgcctactacaaagccatgtctggaagtgtcctc
ctggacaagcgtttcagggcagagtgtaaaaactatggtgtgatcatcccctaccccccc
tccaaccgttatgagaccctgctcaaacagagacacgtacagctcctgggtcgctccatc
gatctgaaccgtctggtcacccagaggatctcagcagccatgtacaagtctctggaccag
gccatcagccgctttgagagtgaagacctcacctccatagtggagttggagtggttgatg
gacatcaacagactgactcatcgtctgctctcgaagcacatgaccctggacagcttcgac
gccatgttccgcgaggccaaccacaatgtgtctgctccctacggacgcatcacgctccat
gtcttctgggaactcaactttgacttcctccccaactactgctacaacggctctaccaac
cgcttcgttcggactgccatcccctttacccaggagcctcagcgagacaagccggccaac
gtgcagccgtactacctgtatgggtctaagcctctgaacattgcctactcacacatctat
agctcctacaggaacttcgtaggcccgccccacttcaagaccatctgccgtctccttggt
taccagggcatcgccgtggtgatggaggaactgctcaagatagtcaagagcctgttgcag
ggcactatcctgcagtatgtgaagactctgatcgaggtcatgcccaagatctgtcgtctg
ccgcgccacgagtacggatccccaggtatcctggagttcttccaccaccagctgaaggac
attatagagtacgctgaactgaagacagatgtcttccagagtctcagagaggtggggaac
gccatcctcttctgtctgctcatcgaacaagctctgtcccaggaggaggtgtgtgacctg
cttcatgcagcccccttccagaacatcctccccagggtctacatcaaagagggggagcgt
ctggaagtcaggatgaagaggctggaggctaagtatgctcctctccatctggtgcccctc
attgagaggctggggacccctcagcaaatagctatagcccgtgagggggatctgttgacc
aaagagcgtctttgctgtggcctgtccatgttcgaggtgatccttacaaggatccgtagt
ttcctgcaggacgccgtgtggcgaggcccgccccccaccaacggcgtgatgcacgtggac
gagtgtatggagttccaccgcctctggagcgccatgcagtttgtttactgcatacccgtc
ggcactcacgagttcaccgcagagcagtgttttggtgacgggctgaactgggcaggctgt
tccatcatcgtgctgttgggtcagcagcgccgcttcgacctgtttgacttctgctaccac
ctgctcaaggtgcagaggcaggacggcaaggatgagatcatcaagaacgtgccgctgaag
aagatggctgatcgcatcaggaagtaccagatcctgaacaatgagatctttgccatcctc
aacaagtacatgaaggctgtggagacggatagttccaccgtggagcatgtccgctgcttc
cagccacctatacaccagtccctggccacaacatgctga
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