Salvelinus namaycush (lake trout): 120062591
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Entry
120062591 CDS
T07522
Symbol
rlim
Name
(RefSeq) E3 ubiquitin-protein ligase RLIM
KO
K16271
E3 ubiquitin-protein ligase RLIM [EC:
2.3.2.27
]
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
snh04121
]
120062591 (rlim)
Enzymes [BR:
snh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120062591 (rlim)
Ubiquitin system [BR:
snh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120062591 (rlim)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-ANAPC11
zf-RING_5
zf-C3HC4_3
zf-RING_UBOX
Prok-RING_4
zf-RING_16
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
120062591
NCBI-ProteinID:
XP_038868610
UniProt:
A0A8U1F2V4
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All DBs
Position
Sna17:complement(38473016..38483334)
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AA seq
701 aa
AA seq
DB search
MEGSDSSEPGASDQPEAQRRRQRDRLDREEAFYQFVNNLSEADYRLMRDNNLLGTPGEIT
AEELLSRLQQIKDGPEQQQPSINTSETGEATGELAEGPEDPSNGDTLLDWLNTVRRTGNT
TRSGHRGNQSWRAVSRTNPNSGDFRFSLEINVNRNLAEQQARAEGEAQEEAATRAPDNGV
EVQPEAGTEVPMETGEVLEEPVVEELAVIVEPEAEMEPEAEVEAEPELEAEMVPELVVEV
VPQPPSPVTTTPPVSRPASPLVQAPPATPAPAPPSPPPEEPPRRGQRRARSRSPEQRRTR
ARTTRSRSPLTLDRLDGLPRQMPTAATTHSPATQAPAEGSSRTRQHVLSRQSTAEYEAQS
AGTGFDTGSGNAPEPVTTPPQEGEAAGTEGAAGRRPPTIMLDLQVRRVRPGEYRQRDSIA
NRTRSRSQNSNNTFLYESERGGFRRTFSRSERAGVRTYVSTIRIPIRRISDAGLGEATSM
ALQTMIRQIMTGFGELSYFMDSDSDSSDSNRGGGNPTGAADLAEALNTPEGGVAGMAEGA
EPPVSVSGHSMGGAGEARTEEREVEDGIGLGLAPGIGLGVGGTPREGRARPRAPISLEEP
GSLPFLRLAHFFLLNDEDEEQPRGLTKEQIDNLSTRNFGESDALKTCSVCITEYAEGNKL
RKLPCSHEYHVHCIDRWLSENSTCPICRRAVLVSANRESVV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggagggctccgacagttccgagccgggcgccagtgaccaaccagaggcccagcgcagg
cggcaacgggaccggctagaccgggaggaggccttctaccagtttgtcaacaacctgagt
gaggcagactaccggctgatgagagacaacaacctgctgggtaccccaggtgagatcaca
gcagaggagttgttgagtcggctgcagcagattaaggatggaccagagcagcagcagcct
agcatcaacaccagtgagactggagaagctacaggagaactggcagaaggtccagaggac
ccgtctaacggcgacaccctcttggattggctgaacaccgtcaggcggacaggcaacacc
acccgcagtggtcaccgaggcaaccagtcgtggcgggcggtgagccggaccaacccaaac
agcggagacttccggttcagtctggagatcaacgttaaccgtaacctggcggagcagcag
gcccgcgcggagggggaggcgcaggaggaggccgcaacaagagcacctgacaatggggtg
gaggtccagcctgaggcggggacggaggtacccatggagacaggagaggtgctggaggag
ccagttgtggaggagctggctgtcatagtggaaccagaagcagagatggagccagaggct
gaagtagaagctgagccagaactagaagcagagatggtcccagagttagtagtagaggta
gtcccacagccgcccagccctgtcaccaccacccctcctgtctccagaccagccagtccc
ctggtgcaggcccctccagccaccccggcccctgcccctcccagccctccccctgaggag
cctccgcgacgtggccagagacgagcccgcagccgtagccccgagcagcgccggaccagg
gctcgcaccacacggagccgttcccccctcaccctggaccgactggacggcctcccccgc
caaatgcccaccgcagccaccacacacagccccgccacccaggcccccgcagagggaagc
tcacggactcgacagcatgttctgtcccggcagagcaccgcagagtacgaggcccagtca
gccggaacagggtttgacacaggttctgggaacgccccagagcccgttaccaccccaccc
caggagggagaggccgcgggcacggagggagcagcgggacgacgtccccccaccatcatg
ctggacctgcaggtgcgtcgtgttcgtccaggtgagtaccgccagagggacagcattgct
aacagaacccgctcacgctcccagaactccaacaacaccttcctgtacgagagtgagagg
gggggattccgcaggaccttctcccggtccgagcgtgcgggtgtgaggacgtacgtcagc
accatcaggatccccatcaggaggatcagtgacgcagggttgggagaggccacctccatg
gctctgcagaccatgatacgacagatcatgaccggcttcggagagctcagctacttcatg
gactcagactctgactcctcggactcaaaccgtggcggtggtaaccccactggcgctgcc
gacctggccgaggcgctcaacactcccgaggggggagtagccggtatggcggagggggcg
gagcctcctgtctcagtgagcgggcatagtatgggaggagccggggaggcaaggacagag
gagagggaggtggaggacgggattggtctgggtctggccccagggataggtttaggggtg
gggggcacccccagggaggggcgagctcggccccgtgcccccatcagtttggaggaacca
gggtcactacccttcctccgccttgctcacttcttcctcctgaatgatgaggatgaggaa
cagcccagaggactcaccaaggagcagatcgacaacctctccaccaggaactttggggag
agtgatgctctgaagacctgcagtgtgtgtatcacagagtatgctgaggggaacaagttg
aggaagttgccctgttctcatgagtaccatgttcactgtatcgaccgctggctgtctgag
aactccacctgtcctatctgccgcagggccgtgctggtgtctgctaaccgggagagtgtg
gtctaa
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