Salvelinus namaycush (lake trout): 120062927
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Entry
120062927 CDS
T07522
Name
(RefSeq) protein polybromo-1-like
KO
K11757
protein polybromo-1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120062927
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120062927
03036 Chromosome and associated proteins [BR:
snh03036
]
120062927
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120062927
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
120062927
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
120062927
NCBI-ProteinID:
XP_038868915
UniProt:
A0A8U1F3I0
LinkDB
All DBs
Position
Sna2:complement(39090271..39127394)
Genome browser
AA seq
1625 aa
AA seq
DB search
MSSKRRRATSPSSSSVSGGDFDDASSSTPGSGRKRRRPSNVPTVDPIAVCHEVYNTVRDH
KDDQGRLLCELFIRVPKRRKQPDYYEVVSQPIDMTKIQQKLKSEDYQDVEQLTADFQLMF
NNAKTYYKADGVEYQKACRLWELYVHTRNEFVQPGDGDEDDDDGEDILDNPALFTEDETP
PSCLKEVLEQLLDAVVSYTDHSGRVISELFQKLPSKVHYPDYYAVIKEPLDLRAITQRIQ
IGYYKSVTGMAKDVDLLVKNAKTYNEPGSQVFKDANIIKKVFIQRKTEIDHAEPTKTSVR
IKNRRSAQGDRFSAITLALQYGSENDEDALLSGSVHYDEGESEAECLSSSMDMGNPVFQL
YEAVRGGRNSQGPLLSEPFLQLPSRKEYPDYYQQIKQPIALQQIREKMKNGEYESVEQMD
SDLTLMLENAKCYNVPTSGISKRALRLQQILLLKKRELLRRGDEEEQDSILSSDTGTGSA
TKRKSHKKNMKNRMKALYAAVTEAREAGTNRRLCDLFMVKPSKKDYQDYYKVILEPMDLK
TIEHNVRSKRYATEEALMDDMRLMFRNARHYNEEGSQVYNDAGILEKIVKDKRKELGASP
EEDIDNMGSPKLKLRKSGVSPKKSNKCLTLLQQRLNELYDAVRNYTDARGRRISTIFLRL
PSRAELPDYYATIKRPIDMERLRSHMAGGRYQDVDALVEDFAVMFNNACTYNEPESLIYR
DALLLHRVLLDTRRLQEGGEEGGGSPPAVGPVVMELIRNLFVSVLAHQDEEGRCYSDSLA
EIPAQDPTSPENPPLNFDVIRANVDRGRYRRLDVFQEHMFNVLEKARRLHRTDSEIFEDA
VELQQFFIKIRDELCKNGEILLSPALSYTSKHLHNDVEQEKREKVPKEIEEDKLKREEEN
KEEGEKAEDPAGGGAGPKRTYRQDCSFENSTYHVGDCVYMQPAEANLKPHIVCIERLWED
EAGEKWLYGCWFYRPSETFHLATRKFLKQEVFKSDYFNKVPISKILAKCMVMFVKDYFKL
QPEGVRPEDVYVCESRYSARNKAFKKIKMWAGPAGVRFVPRDVPLPVIRVASMYAKRDQE
KLLAVADNGSHSIVDKELEDVPVEMSGGEPGCQYYDQLHYNNMWLKVGDCVYVQSHGLVK
PRVGRIEKLWVLDGAAFFFGPIFIHPEETGHEPTRMFYKREVFLSNVEEACPMTCVIGKC
VVSSFKDYLSCRPTEVSEEDVFLCESRYIESEKQMKKFKGLKRFSLHAKVVDDEVYYFRK
LIVPQKEPSPLLNKKIEELELKLADMDEGDEDLDDLEDENEAPETPSMPTIQTPLASDLD
IMPYTPPPQSTPKAKGVSKKEGAKRKVNMSGYILFSSEMRSVIKTRHPDFSFGELSRLVG
TEWRNLEAPKKVEYEERAARVVERQEKERAAQQQASPRAGTPVGSMMGVVPSPSHMGMMP
GPGMMGAYGPPYGMPMQGPHEGPQHLQPDMPGYHPGMPYPGMMGPGMNGMQGSPGGHYYM
QQPGMFSPGQQAPPPYPGQLGQPSHLQPMTPMFVAPPPKTQRVLHSEAYLKYIEGLNAET
DTVSKWDQSLKARRRDAHLSKDQESRLPSHWLKSKGAHKTMADALWRLRDLMLRDSLNIR
QVYNM
NT seq
4878 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgaaaaggagaagggccacctctccatccagtagtagtgtgagcggaggggac
tttgacgatgcctcctcctccactcctggaagcgggcgaaagaggagaagaccctctaat
gtccctacggtagatcctattgctgtgtgccatgaggtgtacaacactgttagggaccac
aaggacgaccagggaagactgctttgtgagctgttcatcagggtaccaaagagaaggaaa
cagccagactactatgaggtggtgtcccagcctatagacatgaccaagatccagcagaag
ctcaagtcagaggactaccaagatgtggagcagctcactgctgatttccagctcatgttc
aacaacgccaagacctactataaggctgatggtgtggagtaccaaaaggcctgcaggctg
tgggaactctatgtccacaccaggaatgagtttgttcagccaggggatggtgatgaagat
gacgacgatggtgaagacatcctagataatcctgctctcttcactgaagatgagacccca
ccgagctgcctgaaggaggttttggagcagctgctagatgctgtagtgtcatacacggac
cactcaggaagggtcatcagtgagctcttccagaagctgccttccaaagtgcactaccca
gactactatgctgttatcaaggagccccttgatctgagagccatcactcagagaatacag
attggatactacaaaagtgtcaccggcatggctaaggatgttgaccttctggtgaaaaat
gcaaaaacatacaatgaaccaggatctcaggtttttaaggatgctaacatcatcaagaag
gtcttcatccagagaaagactgagatagaccatgctgagcccactaagaccagtgtccgc
atcaagaaccggaggtcagcccagggagaccgtttctctgccatcaccctggctttgcag
tacggttcagagaatgacgaggacgccctgctctctggctctgtgcattatgacgagggt
gagtctgaggcggagtgcctgagctccagtatggacatgggtaacccagtgttccagctg
tacgaggctgtgagggggggcaggaacagccagggaccgctcctttctgaacccttcctc
cagctgccctccaggaaagaataccctgactactaccagcagatcaaacagcccatcgca
ctgcagcagatcagggagaagatgaagaatggggagtacgagagcgtggagcagatggac
tctgaccttactctgatgcttgagaacgccaagtgttacaacgtgcccacctcaggcatc
tccaaacgggccctccggctgcagcagatcctgctgcttaagaagagggagcttttgagg
agaggcgacgaagaggaacaggacagcattctgtcgtctgacacaggaactggcagtgcc
accaagaggaaaagccataagaagaacatgaagaaccgtatgaaggcactgtatgctgca
gtgactgaagccagagaggcagggaccaaccggaggctctgtgatctgttcatggtcaag
ccctccaagaaggactaccaagactactacaaggtgatcctggagcccatggaccttaag
accatcgagcacaacgtccgctcaaagcgctacgccaccgaagaagccctgatggacgac
atgaggctgatgttccgcaatgcacgtcactacaacgaggagggatctcaggtttataac
gacgctggcatcctggagaagatagtgaaggacaagaggaaggagctaggagcttctccc
gaggaggacattgacaacatgggatctcctaagctgaaactaaggaagagtggtgtgtct
cctaagaagtccaataagtgcctgaccctcctgcagcagcgcctcaacgagctgtatgac
gctgtgaggaactacacagacgccagggggcgacgtatctccaccatcttcctgcgcctg
ccctcccgtgccgagctgcctgactactacgccaccatcaagaggcccatcgacatggag
cgcctgcgcagccacatggcgggcggccgttaccaggacgtggatgctctggtggaagac
tttgcagtgatgttcaacaacgcctgtacctacaacgagccagagtccctgatctaccgc
gacgctctgctcctccaccgcgtgctcctggatacccggcggctgcaggagggaggggag
gagggcggcggctctccccctgctgtagggcccgtggtcatggaactgatcaggaacctg
tttgtgtctgtgctggcgcaccaggacgaggaggggaggtgttacagcgactcactggct
gagatccctgcccaggacccgaccagcccggagaaccctccgctcaacttcgacgtgata
cgggccaacgtagaccgaggacgctaccgcaggctggacgtgttccaggagcacatgttc
aatgtgctggagaaggccaggcgcctacacaggacggactctgagatctttgaggatgcg
gtggagctgcagcagttctttataaagatccgggatgagctgtgtaagaacggagagatc
ctcctctcccctgcgctcagctacacctccaaacacctgcacaatgacgtggagcaggaa
aagagagagaaagtacctaaggagatagaggaggacaaactgaagagggaggaggagaac
aaagaggagggagagaaggctgaggacccagctgggggaggtgcggggccaaagaggaca
taccgtcaggactgcagctttgagaacagcacctaccacgtgggtgactgtgtctacatg
cagccagcagaggccaacctcaagcctcacatcgtttgcatcgagcgcctgtgggaggat
gaagcaggtgagaagtggctgtatggctgttggttctacaggcctagtgagaccttccat
ctagccacacgcaagttcctcaagcaagaggtcttcaagagtgactacttcaacaaagta
ccaatcagcaagatactggcaaaatgcatggtcatgtttgtcaaggattacttcaagctt
cagcctgagggagtaagaccagaggacgtgtatgtctgtgagtcccgttactctgccagg
aacaaggccttcaagaaaatcaagatgtgggccgggccagccggcgtgaggtttgtccct
cgggatgtgccactgcccgttatccgggtggcctccatgtatgccaagcgtgatcaggag
aaactgttggccgtggccgataacggcagccacagtatcgtcgacaaggagcttgaggat
gtcccggtagagatgagtggaggggagccaggctgtcagtactacgaccagctccactac
aacaacatgtggctgaaggtgggagactgtgtctacgtccagtcacatgggctcgttaaa
ccccgtgtcggcaggatagagaagctgtgggtgctcgacggcgcagcatttttcttcgga
cccatcttcatccacccagaggagacaggacacgagcccaccaggatgttctacaagaga
gaggtgttcctcagcaacgtggaggaggcctgccccatgacctgcgtcataggtaaatgt
gtggtgtcgtcctttaaggactacctttcgtgtcggcccactgaggtgtctgaggaggac
gtgtttctgtgtgagagccgttacattgagagtgagaagcagatgaagaagtttaagggc
ctgaagcgcttctccctccacgctaaggtggtggacgacgaggtctactacttcaggaag
ttgatagtgccccagaaggagccatctcctctactgaataagaagattgaggaactggag
ctgaaactggcagacatggatgagggggatgaggatctggatgacctggaggatgagaac
gaggctccagagaccccctccatgcccaccattcagacccctctggcaagcgatttggac
atcatgccttacacccctcctccccagtccacccccaaggcgaagggcgtttctaagaag
gaaggagccaagaggaaggtcaacatgagtggttatatcctattcagcagtgagatgcgt
tcggtcatcaagacccgccaccctgacttctccttcggggagctcagccgtctggtgggc
accgagtggaggaacctggaggctcccaagaaagtagagtatgaagagcgagcagccagg
gtggtggagcggcaggagaaggagagggcagcccagcagcaagcatccccgagagcaggt
accccagtagggtccatgatgggggtggtgccttcgcctagccacatgggaatgatgcct
ggtccaggcatgatgggagcttacggccccccctacggcatgcccatgcagggcccccat
gagggcccccaacacctccagccagatatgcctgggtaccaccctggcatgccctacccg
ggtatgatgggtcctggtatgaatggcatgcaaggaagtcccggaggccactactacatg
caacagcctgggatgtttagcccggggcagcaggctcctccaccctacccaggccagcta
ggccagccctctcacctccagcccatgactcccatgtttgtggctccaccgcccaagaca
cagagggtgcttcactctgaggcctacctcaagtacatcgagggcttgaacgcagagacc
gacacagtaagcaagtgggaccaatctctcaaagcgcgtcggagagatgcccacctgtcc
aaagaccaggagagcaggctcccttcccattggctgaagagcaagggagcccacaagacg
atggcagatgcactgtggcgcctgcgggacctgatgcttcgagactcactgaacatacgt
caggtgtacaacatgtaa
DBGET
integrated database retrieval system