Salvelinus namaycush (lake trout): 120062948
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Entry
120062948 CDS
T07522
Name
(RefSeq) extracellular matrix protein FRAS1-like
KO
K23379
extracelluar matrix protein FRAS1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04512
ECM-receptor interaction
snh04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120062948
04518 Integrin signaling
120062948
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Calx-beta
Cadherin_4
Big_9
Motif
Other DBs
NCBI-GeneID:
120062948
NCBI-ProteinID:
XP_038868929
UniProt:
A0A8U1F3S2
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All DBs
Position
Sna18:complement(39618058..39705768)
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AA seq
2398 aa
AA seq
DB search
MVEVETEMHFFLYCDTFSFSDVTRNVLQYEHSGLSTDEDAITFTVTDGFSMTTAVVQVVV
LGVGGDGPRRDPEALLSMEVPENSTSVIRRTHLGYTSDTSPDEKIRIQLVSVPMYGILSR
TGSDSDHQEMTEYSSFTVDDVNKHRISYITSFEIGNQPVTDIFHFIVYDGENNRLDNQMC
TITITSMKRQPPVVTVRSGIKVQEGGRVQLSTNHIIVSDLDTPKKDLLVWMISAPKYGFI
ENTRRRGVGSNTRIISPEVPFSMDDLTTDHIFYVQNVQNTDHHYQDTFSFYISDGSSQTE
AFYVNIDILQTKEEMEPVVSVNRVQVEQNSGVVITNSSLNVLDQDTPDNDIIITVTKQPA
YGKLRRRQFYSQPLENGRILSQGSTFTYQDVLDLLLVYTPDAASGGSDELAFSLTDGIHI
TTGRLTFTIDVRKSEGPRMTVNRGLQLAAGSAAKITEQNLKGSDSDSDSLKLRYILTKDL
PLGRLQLSKEDGGGQDKMSVKGPVKSFTQEDVNKGLLEYSHEKGEKGGSVSFKFNLVDPE
GNKLIDQSFFISVLEDHLPPSVVMNKGLVVDENSVKKLTTLQLSATDQDSEPGELVYRIT
KQTALGHLEHASTPGTRITSFSQADLTSRSVQYVHTSEEEKHADQFSFIVSDGANEVAQT
FYITIRPVDDSLPLLVVPGMRVQEGVRKTITEFELKATDADTEEESITFTIVQAPRHGTI
ERTNNGQHYRQTSSFTMDDVYQNRISYNHDGSNSLKDRFTFTVADGTNVFFMVEEAGKEV
LTAAPQKFKIDILPVDDGTPRIVTNLGLQWLEYMDNKATNLISKKELLTMDPDTDDGQLV
YEVTAEPKHGFLESKLKPGAPITSFTQADVNLGLIRYVLHEESVTETMDNFKFLVKDSKP
NVVSDNLFHIQWSLISFQHRSYNVSEKAGTVSVTVKRTGNLNQYAIVLCRTEQGTATSTS
SVGSRPGQQDYVEYAGQVQFDEREDTKVCTIVIQDDKVFEGVESFQVELSMPVYALLGQV
THASVNINDTEDEPTLQFDKKIYHVNESTGFIHAPIERKGDTSSTVSALCYTVPKSAKGS
SLHGLESGSDYKSRSMTGDSRVIFGPGVSMSTCDVKLIDDSEYELSEEFELHLSDASDNA
RMGDVKVAKVVIDGPNDASTVSLGNATFTFSEDAGTIEIPVLRQGSDLSSVTSVWCATRP
SDPPSATPGVDYIPSSRKVEFKAGKTMETCSLTIMDDIQNPAIEGAESFVVFLSSPQGAV
LLEPFEASVVITDTLDLPSMQFEKTAYKVKEKEGVLNISIVRTGDLTVKSSVRCFTRTMS
AMVMDDFEERRNTDDSRIAFLKGEKVKNCTVHINDDSVFEPEEEFQVHLGTPLGDHWSGA
MVGVSDVVTVTITNDEDAPTIEFEQTSYQVREPPGPDGIEVLNIKVVRTGDQDRTSKVRC
STRDGSAQSGVDYNPKSRVLKFTPGMDHILFKVEILSNEDREWHESFSLVLGPDDPVEAV
LGEITTATVTILDQEAAGSLILPATPIVVSLSDYDNVAEVSKEGSKKQPSPGYPLVCVTP
CDPHYSKYSVMRERCNEAGINQTSVHFSWEVAAPTDTNGARSPFETVTDTTPYTGVNHMV
LDSIYFSRRFHVRCVAQARDKSGHLGTPLRSNIATIGTEGSICHTPVTTGTARGFQAQSF
IASLKYLDVKHKEHPNRIHISVQIPHQDGMLPLVSSMPLHNLHFLLSESIYRQQHICSNL
VTLKDLQGVSETGFLDDVQYDSISLGPGYDRPYQFNPSVREAKSIQLYKHLNLKSCIWTF
DAYYDMTELIDVCGGSVTADFQVRDSAQSFLTVQVPLYVSYIYVTAPRGWASLEHHTEME
FSFFYDTVLWRTGIQTDSVLSARLQIIRIYIREDGRLVIEFKTHAKFRGQFVPEHHTLPG
HKSHLMAPDHLGGIEFDMQLIWSAQSFDSPYQLWKATSSYSRKDYSGEYTVFLIPCTVQP
TQPWTDPGDKPLSCTAHAPEKFQLPIAFQQTNRPVPVVYSLNTEFQLCNNEKVFMMDPAV
ADMSMSEMDYKGAFSMGQTLYGRVLWNPEQNLNSAYKLQLEKVYLCTGRDGYVPFFDPTG
TLYNEGSQYGCIQPNKHLKHRFLILDRKQPDICDRYFHDVPFEANFASDITELQTMTAIP
GVDGFTMKVDALYKVEAGHQWYLQVIYVIGPESISGLRIQRSLTYQLTHSSGGGRTRRDL
VDQLSQSIGHSRARRDLVDHSGRLTLDQSLIYDNEGDQTKNGTNMKTLRLEVPAASTFNP
QMGGSVGGGVAALTLLVLVLLASCLLFRKCRRSAGKKPSQMAEEYPLNTKVEVCLERTLE
KNFSSKHCTVRNININRNYDNVNSKVNRGAKVNGGAKVKQVNLEVKLHNNLHNDGTEV
NT seq
7197 nt
NT seq
+upstream
nt +downstream
nt
atggtagaggtagagacagagatgcactttttcctctactgtgacacgttctccttcagt
gacgtgacccgtaacgttttgcagtatgaacactctggcctctccaccgacgaggacgcc
atcaccttcaccgttaccgacggcttctccatgacgacggcggtggtacaggtggttgtg
ttgggcgtcgggggcgacgggcccaggagagacccagaggccctgctctccatggaggtt
cctgagaacagtactagtgtcatcagacgcacacacctgggttatacgagcgacacctct
ccagacgagaagatacgtattcagctggtgtcagttcctatgtacggcatcctgagcagg
acagggtcagactcagaccaccaggagatgacagagtactcctcattcaccgtggacgac
gtcaacaaacaccggatcagctacatcacttcctttgagataggaaatcagccggtgacg
gacatcttccatttcattgtttacgacggtgagaacaatcgccttgacaaccagatgtgt
accatcaccatcacctccatgaagagacagcctccagtggtcactgtccgcagtggcatc
aaggtccaggaaggaggaagagtccagctgtcaaccaatcacatcattgtatcagatctg
gacacacccaagaaggacctgctggtgtggatgatcagcgcgcccaaatatggcttcatt
gagaacacgagacgaagaggtgtcggttcaaatacccgcatcatcagtccagaggttccc
ttctccatggacgacctgaccactgaccacatcttctacgttcagaacgtccagaacact
gaccaccactaccaggacaccttctccttctacatcagtgatgggtccagtcagacagag
gccttctatgtcaacatagatatactgcagactaaagaggagatggagccggtggtatca
gtgaacagagttcaggtggagcagaactcaggagtggtgatcactaactcctctctcaac
gtcctggaccaggacacaccagacaacgacatcatcatcaccgtcaccaagcaacctgcc
tacggcaagctgcgtagacggcagttctactcccagcctctggagaacggtcggatcctg
tctcaggggtccacattcacctaccaggacgtgttggatctgcttctggtgtacacccct
gacgcggccagcgggggcagtgacgagctagccttctctctgaccgacggcatccacatt
accaccggacggctcaccttcaccatagacgtcaggaagagtgaaggaccaaggatgact
gtgaatagaggcttgcagctggccgcaggctcagcggctaagattaccgagcagaacctg
aagggatcagattcagactcagatagcctgaagctgaggtacatcctcaccaaagacctt
ccattaggaagactacagctttctaaagaagacggaggaggacaggacaagatgtctgtt
aaaggacctgtcaagagcttcacacaggaggatgtcaacaaaggtcttttggagtacagt
catgagaagggagagaaaggagggagtgtctccttcaagttcaacctggtggatccagag
ggcaacaaactgatcgaccagtctttcttcatcagtgtactagaggaccacctgcccccc
tctgtggtaatgaataaaggtctggtggttgatgagaactcagtgaagaagctgactact
ctccagctgtcagctacagaccaggacagtgagcctggagaactggtgtaccgcatcacc
aagcagactgcactgggacacctggagcacgccagcaccccaggaacacgcatcacgtcc
ttctcccaggctgacctgacctcccgcagtgtccagtacgttcacaccagcgaagaagag
aagcatgcagaccagttctccttcatcgtgtctgacggcgctaacgaggttgcccagacg
ttctacatcaccatccggccggtggatgactccctccccctgctggtggttcctgggatg
agggttcaggagggggtcaggaagaccatcactgagtttgaactgaaggccaccgacgct
gacacagaggaggagtccatcaccttcaccatagtccaggccccccgtcacggcacaatt
gagcggaccaacaacggacaacactaccgtcagaccagcagcttcaccatggatgacgtc
taccagaacagaatcagctacaaccacgatggatccaactcactgaaggacagattcacc
ttcactgtagctgacgggactaacgtcttctttatggtggaggaggcaggcaaagaggtg
ttgacggctgcaccacaaaagtttaagatagacattctgccagtggatgatggaacacct
cgtatcgtcacaaacctgggactgcagtggctggagtacatggacaacaaggccaccaac
ctgatcagtaagaaggagctgttgaccatggacccagacaccgatgatggccagctggtc
tatgaggtcacagcagagcctaaacacggcttcctagagagcaaactaaaacctggggct
cctatcacctccttcacacaagctgacgttaacctgggcttgatccgctacgtgctccat
gaggagagcgtgacagagaccatggacaactttaagttcctggtgaaggacagcaagcct
aacgttgtctctgataacctcttccatatccagtggtccctcatcagcttccaacacagg
agctacaatgtgagtgagaaggctggcacggtgtcagtcacagtgaagaggacgggcaac
ctgaaccagtatgccatcgtgctgtgtcgtacggaacagggcaccgccacctcgacctcc
agtgtgggctctcgtcccgggcagcaggactacgtggagtacgctggacaggtccagttt
gacgagcgggaggacaccaaggtgtgtaccatagtgatccaggatgacaaggtgtttgag
ggcgtggagagtttccaggtggagcttagcatgcccgtctatgccctcctgggtcaggtg
acccatgccagcgtcaacatcaacgacacagaggatgaacccacgttgcagtttgacaag
aagatttaccacgtcaacgagagtactggcttcatacacgcccccatagagaggaaaggt
gacaccagcagtacagtctcagctctctgttacacggtccctaagtcagctaagggtagc
agtctacacggcctggagtctgggtctgactataagagtcgaagtatgactggtgacagc
agggtcatcttcggccccggcgtctccatgtccacctgtgacgtcaagctcattgatgac
agcgaatacgaactctcagaggagtttgagctccacctatcagacgcctcggataacgcc
cgcatgggtgatgttaaagtggcaaaggtggtcattgacgggccaaatgatgcttcaacg
gtatccctgggcaacgctacgtttacgttcagcgaggacgctggcaccatagagattccg
gtgttgcggcaggggagtgacctgtcgtcagtgacctctgtgtggtgtgccacgcgcccc
tcggatcccccctccgccacccccggggtcgactacatcccctcctccaggaaggtggag
ttcaaagctggcaagactatggagacgtgcagtctgaccatcatggatgacattcagaac
ccagccattgagggggcggagtcttttgtagtgttcctctcctcccctcagggggcggtg
ctcctcgaacccttcgaagcctccgtggtcatcactgataccttggatctacccagcatg
cagtttgagaagacggcgtacaaggtgaaggagaaggagggagtgctgaacatctccatc
gttcgaacgggagacctgacggtcaagtcctctgtccgctgcttcacgcgcaccatgtct
gccatggtcatggacgactttgaggagaggaggaacacagacgactcacgtatcgccttc
ctcaagggagagaaggttaaaaactgcacggtgcacatcaatgacgactctgtgttcgag
ccagaggaggagttccaggtgcatcttgggacgccgctgggggaccactggagcggggcc
atggtgggagttagtgacgtcgtcacggtaaccatcactaacgacgaggacgcacccacc
atagagttcgagcagacgtcctaccaggtgcgggagccccccgggccagacggcatcgag
gtgcttaacatcaaggtggtcaggacaggagaccaggaccgcacctccaaggtccgctgc
agcacccgggacggatcagcccagtccggagtggactataaccccaagagcagggtcctc
aaattcacccctggcatggaccacatcctgttcaaagtggagattctgtccaatgaggac
agggagtggcacgagtccttctcattggtcctcggtcctgacgacccggtggaggcagtg
cttggagagatcaccacggcaacagtcaccatcctggaccaggaagcagcagggagtctc
attctcccggccacgcccatcgtggtatctctgtcagactatgacaacgtggctgaggtg
tctaaggagggcagtaagaagcagccgtcgcctggctaccccttggtgtgtgtgacgccc
tgtgacccgcactactccaaatactctgtgatgagggagcgctgcaacgaggcaggcatc
aaccagacctctgttcacttctcctgggaggtggctgcccctacagacaccaacggggcc
aggtcacccttcgagacagtcactgataccacaccatacactggtgttaaccatatggtc
ctggacagtatctatttctctcggaggttccatgttcgctgtgtggcccaggcccgggac
aagtccggccatcttggaacacccctgaggagtaacatagcaaccatcggcaccgagggt
tccatatgccacacccctgttaccacgggaacagcccgagggttccaggcccagtcgttc
atcgccagtctgaagtatctggatgtcaaacacaaggagcaccccaaccgtatccacatc
tctgtgcagatcccccaccaggacggtatgctgcccctagtgtccagcatgcccctccac
aacctgcacttcctgctgtcagagtccatctacagacaacagcacatctgttcaaacctg
gtcactctcaaagacctgcagggggtctctgagacgggtttcctggatgatgtccagtat
gacagtatctctctgggtccgggttatgacagaccctaccagttcaaccccagtgtccga
gaggctaagagcatccagctgtacaaacacctcaacctgaagagctgtatctggaccttt
gatgcctactacgacatgacggaactcatagacgtctgtggaggctccgtcactgccgac
ttccaggtgcgtgactcggcccagtcgttcctgacggtgcaggttcctctctacgtgtcg
tatatctacgtaacagctcccaggggctgggcctctctggaacaccacactgaaatggag
ttctctttcttctacgacaccgtgctctggaggacaggcatccagacagacagcgtcctg
tcagccagactccagatcatcaggatctacataagagaagatggccgtctggtcatcgag
ttcaaaacacacgccaagttcaggggccagtttgtccccgagcaccacaccctgcctggg
cacaagtcccacctgatggccccggaccacctgggggggatagagtttgacatgcagctc
atctggagcgcccagtcctttgattctccctaccagctctggaaggccacctcctcttac
agcaggaaagactactctggagagtacacagtgtttctgatcccctgtaccgtgcagcca
acccaaccatggaccgaccctggagacaagcctctgtcctgcacagcccacgccccagag
aagttccaactacctatagccttccagcagaccaaccgaccggtgcctgtcgtgtacagc
ctcaacacagagtttcagctgtgcaacaatgagaaggtgttcatgatggacccggccgtc
gctgacatgtccatgtctgagatggactacaagggagccttctctatgggccagacattg
tatggcagagtgctgtggaacccggagcagaacctgaactcagcctacaagctgcagctg
gagaaggtgtacctgtgtacgggacgggatggatatgtgcccttcttcgaccccacaggg
actctgtacaacgagggctctcagtacggctgcatccagcccaacaaacacctcaaacac
aggttcctgatcctggaccggaagcagcctgacatctgtgacaggtacttccatgacgtt
cccttcgaggctaactttgcgtcggatatcaccgaactacagaccatgacagccatacct
ggtgttgatggatttaccatgaaagttgatgccctgtacaaggtggaggcggggcatcag
tggtaccttcaggtgatctacgtgattggtccagagtccatatccggcctcaggattcag
cgctctctgacctatcagctcacccacagcagcggcggggggcggactcgccgggacctg
gtcgatcagctgagccaaagcattggccacagccgtgctcgccgggaccttgttgaccac
agcggacgtctcactctagaccagtctctgatatatgacaacgagggtgaccagacgaag
aacggaaccaacatgaagactctccgcctcgaggtccccgctgcctcaacctttaacccc
cagatgggcggttcggtgggcgggggcgtggccgcactaaccctattggtcctcgtcctg
ctggcttcatgtttactcttcaggaagtgccgacgatcggctgggaagaagccgtcccag
atggcggaggagtaccctctgaacaccaaagtagaggtgtgtttggagaggaccctggag
aagaacttcagctccaaacactgcaccgtcaggaacatcaacatcaaccggaactacgac
aacgtcaactccaaggtcaacagaggcgcaaaggtcaacggaggggcgaaagtcaagcag
gtcaacctggaggtcaagctccataacaacctccacaacgacggcaccgaggtctga
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integrated database retrieval system
