KEGG   Salvelinus namaycush (lake trout): 120063336
Entry
120063336         CDS       T07522                                 
Name
(RefSeq) WD repeat-containing protein 82-like
  KO
K14962  COMPASS component SWD2
Organism
snh  Salvelinus namaycush (lake trout)
Pathway
snh03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:snh00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    120063336
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:snh03019]
    120063336
   03036 Chromosome and associated proteins [BR:snh03036]
    120063336
Messenger RNA biogenesis [BR:snh03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     120063336
Chromosome and associated proteins [BR:snh03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     120063336
    COMPASS/SET1 complex (yeast)
     120063336
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd EIF3I Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_EML WDR90_beta-prop_4th Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_RIG_2nd NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_Vps41 Beta-prop_WDR35_TULP_N VPS8_N Beta-prop_DCAF4 Beta-prop_WDR19_1st Beta-prop_HPS5 Beta-prop_IFT140_1st Beta-prop_VPS8
Other DBs
NCBI-GeneID: 120063336
NCBI-ProteinID: XP_038869592
UniProt: A0A8U1F4E3
LinkDB
Position
Sna2:complement(42748790..42757215)
AA seq 314 aa
MKITDSVLRSFRVARTFRENSQKVNCVDYSSNGESAISSSDDDSIVLYDCQEGKPIRTLY
SKKYGVDLIRYTHGDANTVVYSSNKLDDTIRYLSLTDNKYIRYFPGHTDRVVALSMSPVD
DTFISGSLDMTIRLWDLRSPNCQGLTNPLGKPVCSYDPEGLIFAAGVDSEAIKLYDLRSF
DKGPFASFETLFSRVCEWTGLKFSRDGKQILISTNGGAIRILDAFNGSVLHTFSGYNNSK
GISLEACFTPDSDFVMIGSEDGRVHVWSTESGMKIAVLDGKHSGPINTLQFNPKYMTFAS
ACSNMAFWLPCVGD
NT seq 945 nt   +upstreamnt  +downstreamnt
atgaagattacggacagcgtgttgcgaagttttagggttgctaggacattccgggagaat
tcgcagaaagtcaattgtgtggactacagctcgaacggcgagagtgcaatatctagtagc
gacgacgactccattgttttatatgactgtcaggagggaaaaccaatacggaccctgtac
agtaagaagtacggagtagaccttatccggtatacacacggggatgccaacacagtggtc
tacagctccaacaaactagatgataccatccgatacctgtctctcactgacaacaagtac
atccgctacttccctgggcacactgatagggttgttgctctctccatgtcaccggtggat
gacacgtttatctccggttccttggatatgaccatacgactctgggatctgcgctctcca
aactgtcagggtcttactaatcctttggggaagcctgtttgctcctatgatcccgagggc
ctgatatttgctgctggggtcgactctgaggcgattaaactgtacgacctccgctccttt
gacaagggcccattcgcctcctttgagactctgtttagccgtgtctgtgagtggactgga
ctgaagttcagcagggacgggaagcagattctcatctctaccaacgggggtgctattcgg
atcctagatgccttcaatggatctgtgctgcacactttctcaggctacaacaacagtaaa
ggcatttcattggaggcctgcttcaccccagactcagactttgtcatgattggttcagag
gatgggagggtccatgtgtggagtacagagagtgggatgaaaatagctgttctggacggg
aagcattcaggaccaatcaacacactgcagtttaaccctaaatacatgacgtttgccagc
gcctgctccaatatggcgttctggcttccctgtgtaggagactga

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