Salvelinus namaycush (lake trout): 120063408
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Entry
120063408 CDS
T07522
Name
(RefSeq) replication factor C subunit 5-like
KO
K10756
replication factor C subunit 3/5
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03030
DNA replication
snh03410
Base excision repair
snh03420
Nucleotide excision repair
snh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120063408
03410 Base excision repair
120063408
03420 Nucleotide excision repair
120063408
03430 Mismatch repair
120063408
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snh03032
]
120063408
03036 Chromosome and associated proteins [BR:
snh03036
]
120063408
03400 DNA repair and recombination proteins [BR:
snh03400
]
120063408
DNA replication proteins [BR:
snh03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
120063408
DNA Replication Termination Factors
ELG1-RFC complex
120063408
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
120063408
DNA repair and recombination proteins [BR:
snh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
120063408
Check point factors
HRAD17(Rad24)-RFC complex
120063408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_11
AAA_14
AAA_22
AAA_24
RuvB_N
AAA_16
AAA_assoc_2
ResIII
DEAD
DUF815
AAA_5
ATPase_2
PhoH
AAA_7
AAA_30
TIP49
AAA_19
AAA_2
Mg_chelatase
DNAX_ATPase_lid
Thioredoxin_6
Motif
Other DBs
NCBI-GeneID:
120063408
NCBI-ProteinID:
XP_038869703
UniProt:
A0A8U1H2Y6
LinkDB
All DBs
Position
Sna18:36926105..36934320
Genome browser
AA seq
335 aa
AA seq
DB search
MASIGKIPLQSRNLPWVEKYRPQTLDDLISHKDILSTIQKFISEDRLPHLLFYGPPGTGK
TSTVLASAKQLYKEKEFNAMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDE
ADAMTRDAQNALRRVIEKYTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQDQMIPRL
EFVIQQESIDVTPDGMKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDNVYTCTGHPLRSD
IANILDWSLNKDFTSAYNQILQLKTLKGLALHDILTEVHLLIHRVDFPPAIRMGLLIKLA
DIEYRLASGTSEKIQLSSMVAAFQAVRDIVVNEAA
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgattggcaagataccgttgcagtcaagaaatttgccgtgggttgagaaatac
aggccacagaccctagatgacttgatttctcacaaggacatattaagcaccatccagaaa
tttatcagtgaggacaggctgccgcatctcttgttctatggacccccaggcacagggaaa
acatctactgttctagcctctgccaagcagctctacaaggagaaggagttcaacgctatg
gtcctggagcttaatgcgtcagacgacagaggtatcgatgttgtacgaggacccatcctg
agttttgccagcaccaggaccatattcaagaagggtttcaagttggtgatactggacgag
gctgatgccatgacccgggatgcccagaatgcattgcggcgagtcattgagaagtacaca
gagaacaccaggttctgtttgatttgtaactacctgtctaagatcatcccagccctgcag
tctcgctgcaccaggttccgcttcggacccctgtctcaggaccagatgatacccaggctg
gagtttgttatccagcaggagagcattgatgtaactccagatggaatgaaagctattgtg
accctatcatcaggagacatgagaagatccctcaacatactgcagagcaccagcatggcg
tatgggaaggtcaccgaggataatgtgtacacctgcactggtcacccactacgatccgat
atcgccaacatcctggactggtccctaaacaaggacttcacttccgcttacaaccagatt
ctccagctgaagacgctgaaaggcctagccctgcatgacatcctgacggaagtccaccta
ctgatccacagagtggacttccctcctgccattcggatgggcttgcttatcaagttggca
gacattgagtaccggctggcctctggaactagtgagaagatccaattgagttcgatggtg
gcggctttccaggcagtgagagacatcgtggtcaatgaggccgcctag
DBGET
integrated database retrieval system
