Salvelinus namaycush (lake trout): 120063794
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Entry
120063794 CDS
T07522
Symbol
sox1a
Name
(RefSeq) transcription factor Sox-1a isoform X1
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120063794 (sox1a)
Transcription factors [BR:
snh03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
120063794 (sox1a)
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GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
120063794
NCBI-ProteinID:
XP_038870022
UniProt:
A0A8U1F5B5
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Position
Sna19:complement(29811003..29812028)
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AA seq
341 aa
AA seq
DB search
MYSMMMETDLQSPGPQTNTHLGQTGPNSGSKANQDRVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLSGAGGGGMGLGVGMGSSGVGQRLESTGGHGGSTSSGYAHMNGWANGAYSGQM
AAAAAAAAMMQEAQLAYSQHPGSGHHHHSHHHHHPHNPQPMHRYDMSALQYSPISNSEGY
MSASPSGYGGITYTQHQSSGVSSSAAMGTLGSLVKSEPSVSPPVSTHSRGPCPGDLREMI
SMYLPTGEPGDPSVQSRLHALPQHYQSATAGVNGTVPLTHI
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggagacggacctccagtcccctggaccccaaacgaacacacat
ttggggcaaacggggccgaacagtgggtcaaaagcgaatcaggaccgggtgaagcgtccg
atgaacgcgttcatggtgtggtcccgcgggcagcggagaaagatggcccaggaaaacccc
aagatgcacaactctgagatcagcaagcggctgggagccgaatggaaggtcatgtccgag
gcggagaagagacccttcatcgacgaggcgaagcggttacgagcaatgcacatgaaggaa
cacccggattacaagtacagaccgagacggaagaccaagacgctgctgaaaaaggacaaa
tactctctggccggtggcctgctctctggggccggcggcggtggaatgggtctgggtgtc
gggatgggttcatccggcgtcggccagaggttagagagcaccgggggccacgggggctcc
accagctcaggctacgctcacatgaatggctgggcgaacggtgcgtactcggggcagatg
gctgcagctgctgcggcggcggcgatgatgcaagaggcgcagctagcttacagccagcac
ccgggcagcgggcatcaccaccactcacaccaccaccaccacccgcacaacccccagccc
atgcaccgctacgacatgtcggcactccagtacagccccatctcgaactctgagggctac
atgagcgcatctccgtccggctatggcgggatcacctacacgcagcaccagagctctggc
gtctcctcctcggctgccatgggcacgttagggtcgctggtgaagtcagagccgagcgta
agccctcccgttagcactcactccaggggcccttgccccggagacttgagagagatgata
agcatgtatttaccgaccggagagcccggggacccgtcggtgcaaagtagactccacgca
ttgccgcagcattaccagagtgcgacggctggggtgaacggaacggttccattaacgcat
atatag
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