Salvelinus namaycush (lake trout): 120063857
Help
Entry
120063857 CDS
T07522
Name
(RefSeq) integrin beta-2-like
KO
K06464
integrin beta 2
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04145
Phagosome
snh04514
Cell adhesion molecule (CAM) interaction
snh04517
IgSF CAM signaling
snh04518
Integrin signaling
snh04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
120063857
04517 IgSF CAM signaling
120063857
04518 Integrin signaling
120063857
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
120063857
09142 Cell motility
04810 Regulation of actin cytoskeleton
120063857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
snh04131
]
120063857
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
snh04147
]
120063857
04515 Cell adhesion molecules [BR:
snh04515
]
120063857
04090 CD molecules [BR:
snh04090
]
120063857
Membrane trafficking [BR:
snh04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
120063857
Exosome [BR:
snh04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
120063857
Cell adhesion molecules [BR:
snh04515
]
Integrins
Integrin beta subunits
120063857
CD molecules [BR:
snh04090
]
Proteins
120063857
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_b_cyt
Integrin_B_tail
EGF_integrin
vWA_SIBA-E
EGF_2
I-EGF_1
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
120063857
NCBI-ProteinID:
XP_038870102
UniProt:
A0A8U1F5A8
LinkDB
All DBs
Position
19:complement(42743644..42760067)
Genome browser
AA seq
785 aa
AA seq
DB search
MTLEMYPCVSLLLLLMGRGAIPLVLSQEVKVCSKTVINSCNDCIKSGAYCTWCKQLNFIK
PGEQEAARCDTWAQLVERGCMEGDIISPDNTFSFSKNVALSNTALDKEEPIQLRPQEVNL
KLRPGLPHTFTLDFQRVEGYPVDLYYLMDLSYSMEDDLRSIKTLGNELFNALQGITKKGR
IGFGSFVDKTVLPFTNTNPEKLNKPCAEAEMYCQPAFGYRHVLSMTENKTEFESKVNKQR
ISGNLDSPEGTLDAIMQAAVCGDRIGWRNSSTRLIVLTTDDGFHMAGDGKLAGILEPNDE
RCYMDNNLYSKSNEMDYPSVGQVANQLEKNNIQPIFAVTKNMENVYRELSKMIPKSEVGV
LSADSHNVVELIKNAYNRLSSKVTVTHDALPDNVRVTYTPLCPEGGPSRDKGVCNNVRVG
QMVSFNVTVTADECMDSEMSFLIGPLGMKDKLKVSLSTLCKCECNDLVLVEHQHCNGKGQ
VNCGMCSCKAGFVGQKCECSIGEKDESSLRAACRKDNGTECEGRGDCVCGICQCHTLQGG
STYYGTHCECENESCEKFQNKLCGGNGKCRCKNCECNPGYEGTACQCKKSDEQCRTPSGS
VCSGRGTCQCNQCKCIEGYQRPYCLTCPACQTPCITKGKCIECLGFQTGPFSKNCSQACT
SINEFKMVETLPPGKPCDVRDVESCRVFFTVKQLDGEDTYTAQILKTRECPKLPNIYAII
GGSIAGVTVIGILILILIKVLFHMKDLKEYRKFMNDAQKTKWSENKNPIFQEATTTVANP
TFSGE
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgactcttgaaatgtatccgtgtgtgtctctcctgctcctgctgatgggcagaggtgcc
attcccctagtgctctcccaggaggtgaaagtatgttccaaaacagtgatcaactcctgc
aatgactgcatcaaatcaggagcgtactgcacgtggtgcaaacaactgaatttcatcaaa
ccaggggagcaggaagcagctcgctgtgacacctgggctcagctagtagaaaggggctgc
atggaaggagacatcatatctcccgacaataccttttctttttctaagaacgtcgccctg
tccaacactgcattggacaaggaggaacccatccagctccgtcctcaggaggtcaatctg
aagctcagaccaggactgcctcatacgttcacgctggactttcagagagtggagggctat
cctgttgatctctactacctgatggatctctcctactccatggaggatgatttgaggagc
atcaagactctgggaaatgaactgtttaatgctctgcaaggcatcacaaaaaaaggacga
atcggttttggctcttttgtagacaagactgtcctgccgttcactaacaccaacccggag
aagctgaataagccatgcgccgaagcagagatgtactgccaacctgcttttggctacaga
catgttcttagcatgacggaaaacaaaactgagtttgagagcaaggtcaacaagcagcgc
atctctgggaacttagactcccccgaagggacgctggacgccatcatgcaggctgcagtc
tgtggggacaggattggctggaggaatagcagcactcggcttatcgtcctgaccaccgac
gatggcttccacatggcaggggatggcaagctggctggcatactggagcccaatgacgag
agatgttacatggacaataacctgtacagcaagagcaatgaaatggactacccatctgtt
ggtcaagtggctaatcagttagagaagaacaacattcagccaatctttgctgtgacgaag
aacatggagaatgtatacagggaactcagtaaaatgatccccaagtctgaggtgggagtg
ttgtcagctgactcccataatgtcgttgaactgatcaaaaatgcctacaataggctctcc
tccaaagtgacggtgactcatgatgctctccctgacaacgtgagagtcacttacactccg
ctctgtcctgaagggggaccctcaagggacaaaggagtgtgtaacaatgtgagagtggga
cagatggtgtctttcaatgtaacagtgacagcggatgaatgtatggacagtgaaatgtct
ttcctgattggtccgttgggtatgaaggacaagctgaaagtgagcttgtcgactctctgc
aagtgtgagtgtaatgaccttgtgctggtcgaacaccagcactgcaatgggaagggccaa
gtcaactgtggcatgtgcagttgcaaagccggcttcgtgggccagaagtgtgagtgctcc
atcggggagaaggacgagagctctctgagagcggcgtgccggaaggacaacggcacggag
tgtgaaggacgaggggactgtgtgtgtggcatttgccagtgccacaccttacaaggcggc
agcacctactacggcacgcactgcgagtgtgaaaacgagagctgcgagaagttccagaac
aaactgtgtggagggaacggaaaatgccgttgcaaaaattgcgaatgcaaccccgggtac
gagggcaccgcctgccaatgcaagaagtcggacgagcagtgtcgcacaccaagcgggagt
gtgtgcagcggcaggggcacatgccagtgtaaccagtgcaagtgtattgagggctaccag
cggccctactgtctgacctgtcccgcctgccaaaccccctgtataaccaaggggaaatgc
attgagtgtctgggctttcagacaggcccattcagtaagaactgctcccaggcctgtacg
agtattaatgaattcaagatggtggagacgttgccacctggtaagccttgtgatgttagg
gatgtggagagctgccgggtgttctttaccgttaaacagttggacggagaggacacctac
accgcccaaatactaaagaccagagagtgtcccaagttgccaaacatctatgccatcatt
ggaggctccatcgcaggcgtgactgtcatcggaatcctgatcctgatcctcatcaaagtc
ctcttccacatgaaagacctgaaggagtaccgcaagtttatgaatgatgcgcagaagacc
aagtggtcggagaataagaatccaatattccaggaggcaaccaccaccgtggctaaccct
acctttagtggagaataa
DBGET
integrated database retrieval system
