Salvelinus namaycush (lake trout): 120063999
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Entry
120063999 CDS
T07522
Symbol
si:ch211-199f5.1
Name
(RefSeq) protocadherin-8
KO
K16499
protocadherin delta 2
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120063999 (si:ch211-199f5.1)
Cell adhesion molecules [BR:
snh04515
]
Cadherins
Protocadherins
120063999 (si:ch211-199f5.1)
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
DUF4577
Motif
Other DBs
NCBI-GeneID:
120063999
NCBI-ProteinID:
XP_038870236
UniProt:
A0A8U1F5J5
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Position
Sna19:complement(34979759..34982980)
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AA seq
962 aa
AA seq
DB search
MLFFSLAESEGNPLKYQTNEEGSPGTVIGNLAKDMSLSPSFGSNTNFRMMKQFNDSFIRV
RESDGELSVGERIDRERICRHTLQCLITFDVVSFSKERYKLIHVEVEVKDINDNSPEFPN
KEYTVEISENADVGFRIHLDPAEDADVGSNYIQSYQISVNSHFSIDVLLRADGVKYAELV
LMKELDRETQSSYAVELIATDGGNPYRSGSTKITIKVTDFNDNRPVFDQNNFSVTLPENA
QVGFVLLDLNAVDPDEGLNGEVGYGFGKQVSAEIRELFEVDSKSGRVRLKNPVDFETKKT
YELDVQATDLGSNPTPAVCKIIIHIKDVNDNAPEISITPMTSISTGIAYISETADKDSLV
ALISTSDRDSGVNSQVHCTLYGHDHFKLQQAYEDSYMIVTAAFLDREKISEYNLTVMAED
FGSPPLRKITQYTIRLSDENDNAPHFTKPIYEVSVVENNAPGAYITTVEARDADLGTNGK
ITYRLLDSVIMGSPVNTFVSINAISGSIYALRSFNYEVMKHLEVHIQASDEGSPQLQSSA
IIILKILDQNDNAPSIIEPILNKGSAEIFLPKDAPAGYVVTQIKATDAEEGINAQMSYKI
TEGGHLGFSINKVTGKLHVTHELNYDLSETLRVLVAVNDNGTPSLTSTATIHLTLIEGTP
PSVPAMVQNDSVEVFEWDIAIIIVLSGSCSLLLLAIILITTTCSRRKQEKREAGYSENED
MPHVEKGESRQIDSLITNHKSNVFDVHPFPEKAPLASSNTIKTAPDDGRQEKECVFDNRI
MEGKLEGYSTLPGYRKETLRPITIWKGNSFTTISARDPQFSGKDSGKGDSDFNDSDSDIS
GDGHKKDSPPINSVSTGLWACTSECKILGHSDRCWSPSATRANTSLSHGPHLSTFSKTAS
LPRNTLQRDAYYQQAHLPKINGLQSVYEKVQHQELDYILVCPPTPARILETDEISLPEYG
QS
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgttatttttttcactggctgagtctgagggaaatcctctgaaataccagaccaatgag
gagggaagtccaggaacagtgatcggtaacctggccaaggacatgtccttgagtccctct
tttggctccaatactaatttcaggatgatgaaacaattcaacgattcttttatccgggtg
agagaaagcgacggggagctttctgttggggagaggattgacagagagagaatctgtagg
cacactttacagtgtctcatcacttttgatgttgtcagtttttcaaaagagaggtacaaa
ttgatccatgtcgaggtggaggtaaaagacatcaatgataactctccggagtttccaaac
aaggaatatacagttgagatctctgaaaatgccgatgtggggttccgtattcatttggac
ccagccgaggacgcagatgtcggttcaaactacatccaaagctatcaaatttctgtcaac
agtcatttttcaattgatgtgcttttgagagcagatggggttaaatatgcggagttggtg
ctaatgaaagagctagacagagagactcagtcatcttatgcggtggagcttattgccaca
gacggaggaaacccttataggtcgggttcaacgaaaataacaattaaagtgacagacttt
aatgacaaccgtcctgtttttgaccagaataatttctcggtaactttgcccgagaacgca
caggttggattcgttttattggacttaaatgcagttgatccagatgagggtttaaatgga
gaggtgggctatgggttcggaaaacaggtttctgcagaaatcagagaacttttcgaagtg
gacagtaaatccgggcgcgtgaggcttaagaacccagtggattttgagaccaagaaaaca
tatgaattagacgtgcaggcgactgatctaggatctaacccgacccccgccgtctgtaaa
ataataattcatatcaaagacgttaatgacaatgccccagaaatcagtattacgccaatg
acctccatctcaacaggcatcgcatatatcagcgagacagcagacaaggacagcctagtg
gcgctgatcagcacctcggacagggactcgggcgtcaatagccaggtccactgcacttta
tatgggcacgatcatttcaaacttcaacaggcttatgaggacagctacatgattgtcacc
gcagcattcctagacagggagaagattagtgagtacaatttaacagtgatggctgaagat
tttgggtcacctccattgagaaaaatcacacaatacaccatcaggctaagcgacgagaat
gacaacgccccacactttactaagcctatctatgaagtttctgtggtggaaaataatgca
ccaggggcatatataaccacggttgaagccagagatgcagacttgggaactaatggcaaa
attacatacagacttttagacagtgttataatgggatcacctgtcaacacgtttgtatct
ataaatgcaatctctggttcaatatatgcactgagaagcttcaactatgaagtcatgaaa
catctggaggtacacatccaggcaagcgatgaggggtcaccccagcttcagagcagtgcc
atcatcattctaaaaatattggatcagaatgacaacgctccgtctatcatagagcccatc
cttaataagggatcagctgagattttcctgcccaaagacgcacctgcaggttatgttgtc
acccagataaaggccacggatgctgaagaaggcattaacgcgcagatgtcctacaaaatc
actgaggggggacacttgggtttctctatcaataaggttactgggaagttacatgtgact
catgagctgaactatgatctgtctgaaacattgagagtcctagtggctgtcaatgacaat
gggacaccttctctgacctccacagccactatacacctcactctcatcgaaggcactcct
cccagtgttcctgctatggtccaaaacgacagtgtggaggtctttgaatgggacatagcc
attatcatagtcctatcagggagctgctccctcctcttgctagccatcatcttaatcact
accacctgcagtcgacgcaaacaggagaagagagaggcgggatacagtgaaaatgaagac
atgccacatgtggagaagggggagagcagacaaattgattcattgatcaccaaccacaaa
agcaatgtgtttgatgtgcacccttttcctgagaaagcaccgttggcctcaagcaacaca
ataaaaacagcccctgacgatggaagacaagaaaaagagtgtgtctttgacaacagaata
atggagggtaaattggagggttattcgacattgcctggctataggaaagaaaccctcaga
cccataaccatatggaagggtaattcattcacaaccatctccgcgagagatcctcagttc
agtggaaaggacagtgggaaaggagacagtgactttaacgacagcgactctgacatcagt
ggagatggccacaaaaaagactccccaccgataaacagtgtttccacaggtctctgggcc
tgcaccagtgagtgtaaaatcctaggccactcagaccgatgctggagcccctctgccact
agagccaataccagcctctcccatggaccacacctctcaaccttctccaagacagcctct
ctgccgcgaaacactctgcaaagagacgcctactaccaacaggctcacctacccaaaatc
aatggtctgcaaagtgtctatgaaaaagtccagcaccaagaattggattatattctggtt
tgtccaccaacaccagccaggatactagagactgatgagatatccctcccagagtatgga
cagtcctaa
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