Salvelinus namaycush (lake trout): 120064171
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Entry
120064171 CDS
T07522
Name
(RefSeq) collagen alpha-1(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04510
Focal adhesion
snh04512
ECM-receptor interaction
snh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120064171
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120064171
09142 Cell motility
04820 Cytoskeleton in muscle cells
120064171
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
snh04147
]
120064171
00536 Glycosaminoglycan binding proteins [BR:
snh00536
]
120064171
Exosome [BR:
snh04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120064171
Glycosaminoglycan binding proteins [BR:
snh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120064171
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
FeoB_associated
Motif
Other DBs
NCBI-GeneID:
120064171
NCBI-ProteinID:
XP_038870484
UniProt:
A0A8U1F6L0
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All DBs
Position
Sna19:complement(15009375..15075867)
Genome browser
AA seq
1644 aa
AA seq
DB search
MMVHSGTLVLLVAVSYTIFRTEAKGCSGSSCGGKCDCSGVKGEKGERGFPGLQGNMGFPG
MQGNEGPAGPMGPKGEYGESGTPGMKGTRGSNGLSGFPGNPGLPGIPGQDGPPGSSGIPG
CNGTKGDRGTDGQPGFPGLQGPPGIPGLMGMKGDPGGVLGIIPLKGDKGFPGSPGLPGPN
GPSGPEGPPGNQGSDGPRGFPGTPGPPGEKGDRLSFQSEKGDKGAQGLRGPPGPPGLPSQ
EAGGNTVTHFLPGPPGQRGETGDRGEKGSCIPYLNGVKGEQGPPGPRGKPGKDGDNGFKG
ERGFPGGPGYHGTPGEKGEKGPPAYVDSAPGSPGPPGLPGLQGERGFPGLQGDLGPPGRL
IEGPPGEKGQPGEIGQKGDSGADGDSLTGKPGQDGSIGPPGPPGPPGDEPCDPALEKGPP
GPPGPPGLQGELGQKGDQGDTCVQCEAFGPPGLPGPQGPKGLQGYPGAAGTKGDKGLPGA
TGPDGSPGNYGTPGLIGAPGAHGEPGDIYVAPGLKGDKGGSGFVGTRGLPGVDGLPGKAG
LPGLPGPKGEPARDGIKGDRGLDGEHGITGPPGERGPPGVPGFGRNGEPGEKGTSGQGGR
PGIPGQPGVKGEPGKGVRSPGPQGTPGPRGESGIRGLQGDRGPHGDPGIPGFPGQKGDTG
APGMGFSGPPGPKGYSGAPGATGLPGEPGRPGQDGFSGKPGTPGSKGEPGRGLPGPKGAQ
GPAGVTGFPGEKGNLGLAGIPGQEGHTGPPGAQGIKGDHGPPGQHGGTGPPGPPGEGEPG
APGPMGPPGESGLFGHDGVKGDKGLPGSPGLDMPGPQGEKGDSGLPGLSGSKGFPGRPGP
AGRDGFPGGAGPKGEMGVMGTPGTPGYQGPSGNPGSSGLRGDPGISGPRGEFGEPGPKGE
RGEPGLQGPAGNMTDVDMEHMKGEKGDLGDPGDPGYTGEKGYPGQPGVPGMPGKDGETGT
PGQPGDKGDTGFPGEPGSIGYPGNKGGIGEMGYPGSVGTKGDKGIVGTPGHPGFRGTEGV
KGDKGQTGLPGVGVPGPPGEKGQLGLPGFPGNAGEKGQKGGMGVPGMPGTPGTKGDTGHI
GYQGQPGQPGEKGIGGLPGSPGEPGQTGRPGEPGLQGPPGTTGEKGASGVDGIPGSSGER
GDTGLPGRGFSGTPGSSGDKGDKGSPGFPGSPGIPGIPGTRGDKGTPGFEGSHGQPGERG
LPGPAMEGPKGDQGLPGKPGEPGTSGAPGPAGVSGSVGGKGDKGDQGEPGVHGEQGFKGD
QGYPGLSGQAGLPGVDGLKGEMGLQGVPGFPGTKGEFGVVGFKGELGDRGFPGDKGNDGP
PGPPGPHTFIKGDSGFPGNQGPQGPVGPSGIPGLKGQQGVTGIQGIKGDEGNPGFNGLPG
AKGEPGLLGPSGPRGYPGPPGPDGVPGQVGPPGPSSMEHGFLVTRHSQSVEVPHCPEGTS
VIYDGYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTS
PEPMPMNMAPITGQSIKPFISRCSVCEAPAMVIAVHSQNIMIPSCPNGWDSLWIGYSFVM
HTSAGAEGSGQALASPGSCLEEFRGAPFIECHGRGTCNYYANSYSFWLATIEDEEMFTKP
VPTTQKAGNLRSNISRCQVCMKRT
NT seq
4935 nt
NT seq
+upstream
nt +downstream
nt
atgatggtccatagtggtacgctggttctgttggtggctgtatcctacactatatttcgg
acagaggctaaggggtgttctgggtcatcgtgcggaggaaaatgtgactgcagtggagta
aaaggagaaaagggtgagcgggggtttcctggtctccaaggcaacatggggttcccgggc
atgcagggcaacgaggggcccgccgggccgatgggccctaagggagaatatggcgagtct
ggaactcctggaatgaaaggaacacgtggatctaatggtttgtcaggcttcccaggaaat
ccagggcttccgggtatccccggacaagatggcccccctggatcgtcaggtatcccaggg
tgcaacggaacaaagggagatcgagggacagatggacagcctgggttccctggtctacag
ggtcctcctggtatccctgggctaatgggaatgaaaggagacccaggtggtgttttagga
atcatcccactgaaaggagataaaggattccctggatcacctggtttaccgggacctaat
ggcccctcaggacccgaaggccccccaggaaaccagggatcagacggacccagaggtttc
cctggcacacctggccccccaggggaaaagggtgaccggctgtcattccagagtgagaag
ggagacaagggtgcacaagggctccgtggtccccctggcccccctggactcccatcacag
gaagcgggaggaaataccgttacgcatttcctccctggaccaccgggtcagagaggcgag
acaggagacagaggagagaaaggttcttgcattccctatctaaacggggtcaagggtgaa
caaggcccaccaggaccaaggggaaaacctggcaaagatggcgacaatggatttaaggga
gagagaggctttcctggcggccctggataccatggaacaccgggtgaaaaaggagagaaa
ggacctccagcatatgttgatagtgctcctggctctcccggcccccctggtctcccgggc
ttacaaggagaaagaggtttccctggtcttcaaggagaccttggtccaccaggcaggctt
attgaaggacctcccggagagaagggccaaccaggagagatcggtcagaagggagacagt
ggtgcagatggggactctctcacaggaaagcctggacaagatggatccatcggaccccct
ggacctcccggacctcctggtgatgagccatgtgatccagcccttgagaagggaccaccc
gggccccccggcccaccaggactacagggggagttgggacagaaaggtgatcagggagac
acgtgtgtgcagtgtgaagccttcggcccccctggactccctggtccacaggggcctaaa
ggactgcaaggatatcctggagcagcaggcactaaaggagacaagggcctgcctggagct
actgggcctgatggaagccctggtaattacggtactcctgggttgataggggctccagga
gcccatggtgagcctggggatatctacgtggctccagggctgaagggtgacaaaggaggg
tctggcttcgtgggcacacgaggactgccaggtgtggatggactgccagggaaagctgga
ctaccaggcctgcccggacccaaaggagaacctgcccgagatggcatcaagggggaccgt
ggtctggatggggaacatgggatcactggacccccaggagagaggggtcctcctggtgta
ccagggtttggccggaatggggagcctggagagaagggtacatctggccaaggaggccga
cctggaatccctggacaaccaggagtgaaaggtgaaccaggaaaaggtgtgaggtcacct
ggaccccagggcacccctggacctcgaggagaatctggcatacgtggactacaaggtgac
cgaggacctcatggagacccaggaattccaggattcccaggacagaaaggtgacacaggt
gcacctggcatgggattctcaggaccacctgggcctaaaggatattctggagctccagga
gccactgggttgccaggagagcctggaagacctggacaggatggtttctctggaaaacca
ggcacacctggttcaaagggtgagccaggtaggggtctacctggacctaaaggtgctcag
ggtcctgccggagtgacaggtttccctggagagaaaggcaaccttggtctagctggtatt
cctggacaagagggacacacaggaccacctggagctcagggcatcaaaggtgaccacggc
ccccctggtcagcatggtggcactggaccccctggaccccctggagaaggagaacctggt
gcccctggacccatgggaccccctggagagtcaggcctctttggtcatgatggtgtgaag
ggtgataagggtttgcctggctctcctggtctggacatgcccggccctcagggagagaag
ggagactcaggattacctggactttctggttccaaagggtttccaggacgaccaggcccc
gccggcagagatggattccctgggggggcaggccccaagggagagatgggagtcatggga
acacccggaacaccaggatatcagggtccttctgggaaccctggaagttcaggactgaga
ggtgaccctggtatctctgggccaaggggggagttcggtgagcctggacccaaaggagag
aggggagaaccaggtctccagggccctgctggcaacatgactgacgttgacatggagcac
atgaagggcgagaaaggagacctcggagatccaggtgaccctggatacacgggagagaag
ggttatccaggacagcctggagtacctggtatgccaggaaaggatggagagaccggtaca
cctggtcaaccaggtgataaaggagacacaggttttcctggagagcccggcagtattgga
tatcctggaaataaaggaggcattggcgaaatgggatatccaggttctgtaggtacgaag
ggtgataaaggcattgtgggcacaccgggtcatccagggttcaggggtacagagggggtg
aagggagacaagggacaaaccggtctgccaggtgttggagtaccaggaccccctggagag
aagggtcagttgggtctgcctggtttccctggtaacgcaggagagaagggtcagaaggga
ggaatgggagtgcccgggatgccaggaacaccaggaaccaagggagacactggacacatc
ggttaccaaggtcagccgggtcagccaggagagaagggtattggtgggcttcccgggtca
ccaggagagccaggtcaaacaggtcgaccaggtgagcctggtctgcagggtccaccaggt
acaaccggagagaaaggagcgtcaggagtggacggcatacctggatcatcaggagagaga
ggagacacaggtttacccggcaggggcttctcagggacaccagggtcatctggggataaa
ggtgacaaaggctctccaggtttcccaggctctccaggtatcccgggtatcccagggacc
aggggagacaagggtacgccaggcttcgagggttcccatggacagccaggagaacggggt
ctcccaggacccgccatggaggggcccaaaggagaccaaggactgccaggaaagcctgga
gaaccaggtaccagtggtgctccaggtcctgctggtgtttcaggcagcgtgggggggaag
ggagacaaaggggaccagggtgaaccaggagtacatggggagcagggtttcaaaggagat
caaggataccctggactttctggtcaagctggccttccaggtgttgatggactgaaggga
gagatgggactgcagggagtgcctggtttcccagggacaaagggtgaattcggagtggtt
ggattcaaaggagagctgggggacagaggattcccaggagacaaaggtaatgatggtcca
cctggtcctcctggcccccacaccttcatcaagggagacagcggcttccctggtaatcag
ggccctcaggggcctgtggggccctcgggtatccctgggctgaaaggacagcaaggtgtg
acaggtattcagggtattaaaggtgatgaggggaacccagggtttaatggtctccccggc
gccaagggagaaccaggcttgcttggtccctcaggacccagagggtaccctggaccccca
ggacctgacggtgttccgggtcaggtgggtcctcctggcccctcctccatggaacatggt
ttcctggtaaccaggcacagccaatcggtggaggttccacattgtcctgagggaacgtca
gtgatctatgatggatattccctactctacgttcagggcaacgagcgctcccacggccag
gacctgggtacggctggtagctgtctaaggaagttcagtcccatgcccttcctcttctgt
aacatcaacaacgtctgtaactttgcctcccgtaacgactactcctattggctcacctcc
cctgagcccatgccaatgaacatggcccctatcactggccagagcatcaagcccttcatt
agcaggtgttcagtgtgtgaggctcctgccatggtgatagcagtgcacagtcagaacatc
atgatcccatcatgccccaatggctgggactcactctggattggctactccttcgtcatg
cacacaagtgcaggtgctgagggctctggacaggcactggcatctcctggctcctgtcta
gaggagttccgtggcgctccgttcatcgagtgtcacggccgtggaacctgcaactactac
gccaactcctacagcttctggctggccaccattgaggacgaggagatgtttacgaaacct
gtgcccaccacacaaaaggcaggaaatctccggagtaacattagccgttgccaggtgtgc
atgaagaggacatag
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integrated database retrieval system
