KEGG   Salvelinus namaycush (lake trout): 120064224
Entry
120064224         CDS       T07522                                 
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
snh  Salvelinus namaycush (lake trout)
Pathway
snh03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:snh00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120064224
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:snh03041]
    120064224
   03036 Chromosome and associated proteins [BR:snh03036]
    120064224
Spliceosome [BR:snh03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    120064224
 Complex B
    120064224
 Complex C
   U2 SnRNP specific factors
    120064224
Chromosome and associated proteins [BR:snh03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    120064224
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Adaptin_N UNC45-central DUF2298 DUF5870
Other DBs
NCBI-GeneID: 120064224
NCBI-ProteinID: XP_038870579
UniProt: A0A8U1F756
LinkDB
Position
Sna19:22824239..22842683
AA seq 1328 aa
MAKIAKTHEDIEAQILEIQGMKAALVEEGADQGVGLDSTGYYDQEIYGGSDSRFAGYVTS
IAANEQEDDDEEDSSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPAKIAEREDE
YKARRRQMIISPERLDPFADGGKTPDPKLQSRSYMDVMKEQHLTKEEKEIRQQMAEKAKT
GDLKAVNGSAASQAAAAAAAAKRKRRWDQTAEKQDQSGTPSNAGTPKKMSSWDQADQAAE
QTPGHTPGHTPSNSRWDETPGRNKGSETPGATPSSRMWDPTPSHTPAGAATPGRGDTPGH
TTPGHGGATGSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKS
RWDETPASQMGSSTPLMTPGKTPIGTPAMNMATPSPGHLMSMTPEQLQAWRWEREIDERN
RPLTDDELDAMFPEGYKVLPPPAGYVPIRTPARKLSATPTPMGGMTGFHMQQEDRSMKQI
NDQPSGNLPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAAL
RQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILV
VIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVA
SALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVD
EQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPL
MDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFK
HFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIM
GNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTV
LWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGA
LKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWM
RICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAI
AIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDA
LMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEG
LRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPHVYNDEKNPYL
RYELEYFL
NT seq 3987 nt   +upstreamnt  +downstreamnt
atggcgaagatcgccaaaacacacgaagacatcgaggcccagatcctggagatccagggc
atgaaagctgccctggtggaggagggagcagatcagggtgtgggcctggactccactgga
tactacgaccaggagatctacggtggcagcgacagccgcttcgctggatatgtcacctcc
atcgcggccaatgaacaggaggatgatgatgaggaggactcgtcaacgagtctacttgga
cagaagaaaccgggatatcacgctccagtggctatactcaatgcaataccacagtcagat
gaacagtacgacccgttcgccgaacaccggcccgctaagattgcagagcgtgaagacgag
tacaaggccagacgtcgacagatgatcatctctccggagcgacttgacccctttgcagat
gggggcaaaacgccggaccccaagctgcagtccaggtcgtacatggacgtcatgaaggag
cagcacctgaccaaagaggagaaagagatccgtcagcagatggcagagaaggccaaaaca
ggagacctgaaggctgtcaacggctctgctgcctcccaggctgctgctgctgccgccgcc
gcaaagcgaaaacgccgctgggaccagacggccgagaaacaggaccaatcaggaaccccc
agcaacgccggcacacctaagaagatgtccagctgggaccaggccgatcaggctgctgag
cagaccccaggacacacacctggccacaccccctccaacagccgctgggacgagacccca
ggaaggaacaagggcagtgagaccccaggggccacccccagctcccgaatgtgggacccc
acccctagccacaccccagctggagcagctacaccaggcagaggggacacaccgggacac
accacccctggacacgggggagccacaggcagcgtgcgaaaaaaccgatgggacgaaacc
cccaagacggagagggagacccctggtcatggaagtggttgggccgagaccccccgtaca
gacagaggagacgagtcagtgggagagacccccacccccggggccagtaaaaggaagtcc
cgttgggacgagacccccgccagccagatgggctcttccaccccactgatgacccctggg
aaaactcccatcggaacccctgccatgaatatggccactccttctccaggtcacctgatg
agcatgaccccagagcagctgcaggcctggcgttgggagagggagatagacgagaggaac
cgacctctcacagacgatgagctggatgccatgttcccagaaggatacaaggtccttccc
ccaccagcaggctatgtgcccatccgtaccccggcccggaagctgtctgccacccccacc
cccatggggggcatgacgggcttccatatgcagcaggaggaccgctccatgaagcagatc
aacgaccagcccagtgggaacctgcccttcctcaaaccagacgacattcagtactttgac
aaactgctggttgaggtggatgagtccactctgagcccagaggaacagaaggagcgtaag
atcatgaaactgctgctgaagatcaagaacggaacacctcccatgagaaaggctgccctg
cgtcagatcacagacaaggcgagggagtttggagcagggcccctgttcaaccagatcctg
cccctgctcatgtctcctactctggaggaccaggagcgccacctgctggtcaaggtcatc
gaccgcatcctctacaagctggacgatctcgtccgcccatatgtacacaagatcctggtg
gtgattgagccgctgctgattgatgaagattactacgccagagtggaaggcagagagatc
atctctaatttggccaaggctgccggcctggccactatgatctccactatgagacctgat
attgacaacatggatgaatacgtcagaaatacaacagcaagagcttttgctgtcgtagcg
tccgctctgggtatcccctccctcttgcccttcctcaaagctgtgtgtaagagcaagaag
tcttggcaggcccgccacacgggcatcaagattgtccagcagatcgccatcctcatgggc
tgtgccatcctgccccatctgaggagtctggtggagatcatcgagcatggtctagtagat
gagcagcagaaggtgcggaccatcagtgccctggccatcgccgccctggctgaggctgcc
acgccctacggtatcgagtcctttgactccgtactcaaacccctgtggaagggtatccga
cagcacagaggaaagggtctggctgcgttcctgaaggccattggctacctgatccctctg
atggatgctgagtatgctaactactacaccagagaggtcatgctgatcctcatcagagag
ttccagtcccctgacgaggagatgaagaagatcgtgctcaaggtggtgaaacagtgttgt
ggtactgatggtgtggaagccaactacatcaagaccgagatcctgcctcccttcttcaag
cacttctggcagcacaggatggccctggacagacgcaactacagacagctggtggacacc
acagtggagcttgccaacaaggtgggagcagcagagatcatctctcgtatagtagatgac
ctgaaggacgaggcagagcagtacaggaagatggtgatggagaccatagagaagatcatg
gggaacctgggagctgctgacatcgaccacaagctggaggagcagctgatcgacggcatc
ctgtacgccttccaggaacagaccacggaggactctgtgatgttgaacgggtttggcacg
gtggtgaatgccctggggaagagggtgaagccctacctgcctcagatctgtggtacagtg
ctgtggcgtctcaacaacaagtccgccaaggtccgccagcaggctgctgacctcatctcc
cgcaccgccgtggtcatgaagacctgccaggaggagaagctgatgggtcacctgggagtg
gtgttatatgagtatctaggagaagagtatcctgaagtactgggaagtatccttggtgct
ctcaaggccatcgtcaatgtcatcggtatgcacaagatgactccaccaatcaaagacctg
ctacctcggctgacacccatcttgaagaacagacatgagaaggtgcaggagaactgtatt
gacctggtgggcaggattgctgacaggggtgctgagtacgtgtcggccagggagtggatg
cgtatctgctttgagctgctggagctcctcaaggcccacaagaaggccatccgcagagcc
actgtcaacacctttggatacatcgccaaggctatcggaccccatgacgtgctggccaca
ctactcaacaacctgaaggttcaggagcgtcagaacagagtgtgtaccaccgtagccatc
gccattgtggctgagacctgttctcctttcaccgtgctccccgccctcatgaacgagtac
cgcgtgcctgagctcaacgtgcagaacggcgtgctcaagtccctgtccttcctgtttgag
tacatcggggagatgggcaaggactacatctatgctgtcactcccctgctggaggacgca
ctgatggacagagacctggtccacagacagactgccagtgccgtggtgcagcacatgtcc
ctgggcgtctacggcttcggctgtgaggactcccttaaccacttgttgaactacgtgtgg
cccaacgtgtttgagacgtcgccccatgtaatccaggctgtcatgggggccctggagggt
ctcagggtggcgatcggcccctgccgcatgctgcagtattgcctgcagggtctcttccac
ccagccaggaaggtccgagacgtctactggaagatctataactcgatctacatcggttcc
caggatgctctgatcgctcactacccccacgtctacaacgatgagaagaacccttacctc
cgctatgagctggagtacttcctgtga

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