Salvelinus namaycush (lake trout): 120064359
Help
Entry
120064359 CDS
T07522
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120064359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
snh04121
]
120064359
Enzymes [BR:
snh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120064359
Ubiquitin system [BR:
snh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
120064359
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
zf-B_box
ANCHR-like_BBOX
fn3
zf-RING_UBOX
RING_XB3-XBAT31
TRIM_CC
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
PRY
zf-RING_2
FN3_DSCAM-DSCAML_C
zf-C3HC4_3
Pur_ac_phosph_N
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
120064359
NCBI-ProteinID:
XP_038870813
UniProt:
A0A8U1H4S1
LinkDB
All DBs
Position
19:34862443..34886555
Genome browser
AA seq
669 aa
AA seq
DB search
METLESELTCPICLELFEDPLLLPCAHSLCFNCAHRILVSHCTPNEPVQSISAFQCPTCR
YVITLSQRGLEGLKRNVTLQNIIDRFQKASVSGPNSPSETRRERAALDSKAMTSPSERVQ
CQFCEQDPPQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPMPDCHLRGLMCLEH
EDEKVNMYCVTDEQLICALCKLVGRHRDHQVAALSDRYEKLKQALDSNLSNLIKRNNELE
TLMGKLIQTCQHVECNASRQENKLLEECDLLIDIIQQRRQMIATKIKEGKAIRLRKLAQQ
IASCKQIIERSSSLITQADHTLKETDHARFLQTAKSICERVSMATASSQILIPEINLNDT
FDTFALDFTREKKMLESLDYLTAPNPPIIRAELCTASNDTITVHWTSDDEFCVVSYELQY
AIFTGQANVVSLCNSADSWMIVPNIKQNHYTVHGLQCGTKYMFIVKAINQAGSRSSEPWK
LKTNSQPFKLDPKSAHKKLKVSHDNLTVERDETLSKKSHTQDRFTSQGSYGVTGNVYIDS
GRHYWEALIGGSTWFAVGVAYKSAPKHEWIGKNSASWVLSRCNNSWVVRHNSKEMPIEPS
PHLRRVGVLLDYDAGSLAFYDGAGSQHLYTFDIAFAQPVCPVFNVWNKCLTVLTGLPIPD
HLEGTDCRD
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggaaacactggagtcggagctgacctgcccaatctgtctggagctcttcgaggaccca
ctgctcttgccctgcgctcacagcctgtgtttcaactgtgcccaccgcatcctagtctcc
cactgcacccccaacgagcctgtgcagtccatcagcgccttccagtgcccaacctgtcgc
tatgtcatcaccctcagccagaggggcctagaaggactgaagcgtaacgtcactctgcag
aacatcattgaccgctttcagaaggcttccgtgagcgggcccaactcccccagtgagact
cgccgcgagcgggccgccctagacagcaaggccatgacctcccccagcgagagggtgcag
tgtcagttctgtgagcaggaccctccccaagacgccgtcaagacctgtgtcacctgcgag
gtgtcctactgcgatgagtgcctgaaggccacccaccccaataagaagcccttcactggc
caccgtctgatcgagcccatgccggactgccacctcaggggactcatgtgtctggagcac
gaggacgagaaggtgaacatgtactgtgtcacagatgaacagttgatctgtgccttgtgc
aaactggtcggtcggcatcgggaccaccaagtagcagcactcagcgaccgctacgagaaa
ctgaagcaagccttggactctaacctcagcaatctaatcaagaggaacaatgagttggaa
actctgatgggcaagttgattcagacttgccaacatgtggagtgtaatgcatcaagacaa
gagaacaagctccttgaagaatgtgacctcctgatcgacatcatacagcagagaaggcag
atgatagccaccaagataaaggagggcaaggctatacggctgcgaaagctagcccagcag
atcgccagctgcaagcagatcattgagagatcgtcgtccctcatcactcaggctgatcac
accctcaaggagacagaccatgcccgcttcctgcaaacagccaaaagcatctgtgaaaga
gtgtccatggcaacagcatcctctcagatcctgataccagagatcaacctaaatgacacc
tttgatacgtttgcgttggacttcacaagggaaaagaaaatgctggaaagcttggattac
ctcacagcaccaaatcccccaataatccgggcggaattatgtacggcatcgaacgacacc
atcactgttcactggacgtctgatgacgagttctgtgtggtctcctatgagcttcagtat
gccatcttcaccggacaagccaatgttgtcagtttgtgtaactcggctgatagctggatg
attgtgcccaacatcaagcagaatcactacacggtgcatggactccagtgtggcaccaag
tacatgttcatcgtcaaggccatcaatcaggcagggagtcgcagcagtgagccttggaaa
ctcaagaccaacagtcaaccattcaagttggacccaaagtctgctcacaagaagctgaag
gtctcccatgacaacctgacagtggagcgagacgagacgttgtccaagaagagccacact
caggaccgcttcaccagccagggcagctacggcgtcacagggaacgtgtacatcgacagc
gggcgccactactgggaagccttgataggagggagcacatggtttgctgtgggcgttgct
tacaagtcagcaccgaaacatgagtggattggcaagaactctgcctcgtgggtactttct
cgctgcaacaactcctgggtagtacgtcacaacagcaaggagatgcccatcgaaccgtcc
ccccacctgcgtcgtgtgggggtgttgctggactacgatgctggctccctggccttctac
gatggcgccggctcacagcacctgtacacgttcgacatcgccttcgctcagccagtctgt
cccgtgttcaacgtgtggaacaagtgtctgactgtcctcacagggctgcccatcccagac
cacctagagggaacagactgccgggattaa
DBGET
integrated database retrieval system
