Salvelinus namaycush (lake trout): 120064420
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Entry
120064420 CDS
T07522
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120064420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
snh03041
]
120064420
Spliceosome [BR:
snh03041
]
Complex A
U1 snRNP components
U1 related factors
120064420
Complex B
120064420
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GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
Motif
Other DBs
NCBI-GeneID:
120064420
NCBI-ProteinID:
XP_038870919
UniProt:
A0A8U1F7I0
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Position
Sna19:40710147..40738878
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AA seq
891 aa
AA seq
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MSSDGNNGQSQAPPFAGVPTSGMPPPFMGPPGMPPHYPPMGIPPMGQRPPNMAPMPPGMM
PPGMMPPMGQIPGMMPPMMPGMMMPPHMPSAAMQPTGPPGVDTTVTAAPGTVGTTNGTPQ
DDQPKKKSVWTEHKSMDGKTYYYNTETKQSSWEKPDDLKSPAEQMLSKCPWKEYKSDNGK
AYYYNSQTKESRWTKPKELEDLEAMIKAEENGTSEVGAPCAVIAPTLQPDSAAVMATMMI
EMPVMMPITTVLEEQMSQVPMHVAEVSAEAPVNSTEEAVGMEASASNDASKDERPELVKK
TYKWNTKEEAKQAFKELLKEKGVSSNASWEQAMKMIINDPRYSALPKLSEKKQAFNAYKV
QTEKEEKEEARLKYKESKETYQRFLENHEKMTSTTRYKKAEQMFAELDVWSTVPERDRLE
IYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAED
EELQNMDKEDALICFEEHIRALEKEEEDEKQKTLLRERRRQRKNRESFQKFLDELHDHGQ
LHSMSAWMEMYPTVSSDIRFANMLGQPVYGVYSAGSTPLDLFKFYVEDLKARYHDEKRII
KDILKDKNFLVEVNTSFEDFGSVISSDKRAMTLDAGNIKLAFNSLLEKAEAREREREKEE
ARKMKRKEATFKSMLKQATPALEPEATWEGVRERFLKESAFEDVTLESERKRIFKDFMHV
LEHECQHHHSKTKKHSKKSKKHHRKRSRSRSRSRSGSESDGEDDYHNKKKKRSQSKSPSE
RSSSGESERSYKKSKKHKKKGKKRRHKSQSPESEGERKDKGRERDSKREKDQEKEKESDK
SRGKSRSDSKQKSPKRKSTKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagatggtaataatggccagagccaagcacctccttttgctggggtcccaacc
tcaggcatgccaccgccttttatgggaccaccgggaatgccgcctcattacccaccaatg
ggaattccacccatgggacagaggcctcccaacatggctcccatgccgcctggcatgatg
ccacctggtatgatgccaccgatgggacagataccaggcatgatgccacctatgatgccc
gggatgatgatgccccctcacatgccttctgcggcgatgcagccaacaggaccgcctgga
gtggacacaactgtcactgctgcgcctggaacagttggtaccacaaatggcacgccacag
gatgaccaaccgaagaagaagtctgtgtggacagaacacaagtctatggatgggaagacc
tactactacaacacagagaccaagcagtcttcttgggagaagcctgacgacttgaaatct
cctgcagaacaaatgctgtcaaaatgcccatggaaggagtataaatcagacaatggaaag
gcgtactactacaactcccagactaaggagtcccggtggaccaaacccaaagagcttgaa
gatctggaagccatgataaaagccgaggagaatgggacatcggaggtaggcgctccttgc
gctgtaatcgcccctacccttcagcctgacagcgctgctgtcatggcgaccatgatgata
gaaatgccggtcatgatgccgattacaacagttttggaggaacagatgtcccaggtgccc
atgcatgtagcggaggtcagcgctgaggcgcctgtgaactccacagaagaagcggtcggc
atggaggcctcagccagtaatgacgcttcaaaggacgagaggccagagctggtgaagaaa
acatacaagtggaacacgaaagaagaggccaagcaggcctttaaagagctcctgaaggag
aagggagtttcatccaatgcgtcttgggaacaagccatgaaaatgatcatcaatgaccca
cgctacagtgccctgcccaaattaagcgagaaaaagcaggccttcaatgcttacaaggtg
cagacagagaaagaggagaaggaggaggccagactcaaatacaaggagtccaaggaaaca
tatcagagatttttggagaatcacgagaaaatgacatctaccaccagatacaagaaagca
gagcagatgtttgcagagctggatgtgtggagcaccgtcccggagagagacagactggag
atctatgaagatgtcctattctacctggccaagaaggagaaggagcaagccaagcagctg
aggaagaggaactgggaggcgctgaagaacatcctggacaacatggccaacgtgacgtac
cgcactacctggtccgaggcccagcagtacctgctggacaaccccaccttcgcagaggac
gaggagctccagaacatggacaaggaggatgctctgatctgtttcgaggagcacatccga
gcgctggagaaggaggaggaggacgagaagcagaagactctgctgagggagaggaggaga
cagcggaagaacagagagtccttccagaaattcctggacgagctccatgaccacggtcag
ctccactccatgtctgcctggatggagatgtaccccaccgtcagctcagacatccgcttc
gccaacatgctgggccagccagtttatggtgtctattctgcaggctccactcccctcgat
ctgttcaagttctatgtggaagacctgaaggctcgctaccatgacgagaagaggatcatt
aaggatatcctgaaggacaaaaacttcttggttgaggtcaacactagctttgaagacttt
ggctctgtgatcagctcagacaagagagccatgacgctggacgcaggcaacatcaagctg
gccttcaacagtttgctggagaaggcggaggcccgggagagggagcgggagaaggaggag
gccaggaagatgaagaggaaagaggctacctttaagagcatgttgaagcaggccaccccg
gccctggaaccagaggccacttgggagggggtccgagaaaggttcctcaaagaatctgcg
ttcgaagacgtgactctggagtctgagaggaaaaggatattcaaagacttcatgcatgtc
ttggagcacgagtgccagcatcatcactccaagaccaagaaacattccaagaagtccaag
aagcaccacaggaagcgctcccgctcccgttctcgatcacgatcgggctcggagtctgat
ggtgaagacgattatcacaacaagaagaagaagcgctcacagtccaagtccccgtccgag
cgctcctccagcggcgaatctgagagaagttataagaagtccaagaagcacaagaagaag
gggaagaagaggcgtcacaagtcgcagtctcctgaatctgaaggcgaacgaaaagataaa
ggaagagagagggacagcaagcgtgagaaggaccaggagaaggagaaagagagcgacaag
tcccgggggaagagtcgctctgactctaagcagaagtcgcctaaaaggaaatctaccaag
gaggagggtggctgggacacatcaggcagcgagctgagtgaaggagagctggagaagagg
aggaggactctactagaacagctggatgctccttga
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