Salvelinus namaycush (lake trout): 120064422
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Entry
120064422 CDS
T07522
Name
(RefSeq) NFX1-type zinc finger-containing protein 1-like
KO
K27391
NFX1-type zinc finger-containing protein 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
120064422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
ZnF_RZ-type
AAA_19
AAA_30
ResIII
DEAD
PhoH
UvrD-helicase
AAA_22
SLFN-g3_helicase
nSTAND3
AAA
AAA_16
Mei5
Motif
Other DBs
NCBI-GeneID:
120064422
NCBI-ProteinID:
XP_038870928
UniProt:
A0A8U1F7L9
LinkDB
All DBs
Position
Sna2:complement(52141746..52158153)
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AA seq
1779 aa
AA seq
DB search
GGGRGRGGVRGRGRGRGGGREISIGGGTPQVHPMDYPTLEELSGKDPLELAITLYSMNHE
LQALLDEREMRQDLVQLLCQVLCKAFLSKTNHQTVQYLTGLIKDSGFLRTILPHYVMGMG
SEFDHTRREQYPQHLDNIMILLSKVLSVFPASSIKGVSMIVALFRPVIISLRAVGVDVLE
QTEENLDRIQGLVEHLQERAREGTLRSDNYSFITPQEDAPPGEADFRTLPIYPIPKEFHQ
DQRSYLRPNLISQRYASGLLYLDTHFRLMREDFVRPLREGIQQLIQSQQDLGNKDIPLRK
CRFDDIRVYFDTRLVVPLCTPSGLAYKVQFDSHPLKFVRWQNSKRLIYGSLLCMSCDNFD
TFLFATVSDRDPKELEKGFVQLSFLGESRRALAGVEAHQSFLMVETTAYFEAYRYVLEGL
QELEVEDLPFQRYIVECSSDVEPPAYLPRADTYDLSAIAVPEFKSSIKSFHTLDPEAWPP
MEQLGLDESQMRALQLALTKELAIIQGPPGTGKTYTGLKIAQALLTNQEMGRGFTSPMLV
VCYTNHALDQFLEGIHKFLPDGIVRVGGQSNSEVLKRFTLRELKSSHYFRRNLPQHLRRA
NSKIYDALRTEETKIQTQSVQLECSLRGVLREQYLQKFISEKHWDSLTLQPALDGFEGCG
GKKPSLVMEWLGLGFTAFQQRTPHPQNCNADGEMDEAEEEEDDLIEIAEEADLIQAERFV
EASNMHHGRDEDLRKTEETVRDMAELMLAMNLENTEIQAEQSEEGWEMQRVQKRKMKHRI
RRELGRSSAVSEDEEDTILDVWTLSLPDRWRLYRLWVRRYRTELRMRAQQAEQDYQDTAE
RLAEIRFLEDLFVLKHAKVIGMTTTGAARCRKALQEVSPRLVIVEEAAEVLEAHTITTLS
KACQHLILIGDHQQLRPSATVFDLAKNFSLEVSMFERLIKMDIPYVRLNYQHRMRPDIAR
LLVPHIYSELENHPSVMDFENVKGLHSNMFFVEHNYHEEEIKDGKSHQNRHEALFVVALC
RYLLLQDYQPFQITILTTYTGQLHCLRNLMPAKEFNGVKVHVVDKYQGEENDIVLLSLVR
SNKQGKMGFLNIPNRVCVALSRAKKGLYCIGNMDMLGKVKLWSNILHTLREKDQVGPAMT
LCCQNHPERHIKVSCGDDFKQAPEGGCNLPCEFRLNCGHACSSACHPYDQEHKKYTCNKK
CQKVLCELGHRCQRQCYQECPTDCLKRVEKIVPQCQHKQMVPCHQAPEKFVCQEPCQQKL
MCGHPCALVCGESCTTTCMVMVTLELKCGHKQEDPCHYKRSTIQPECRTHCKQMLKCGHP
CPGSCQRCHQGRFHMGCLHQCDRLLVCSHKCREPCTRGCPPCQMRCENRCIHSVCMKPCG
QLCAPCIEPCAWKCPHQRCSKLCHEPCDRPPCTQPCTKTLHCGHPCIGLCGDPCPNKCRV
CHHEEVTEIFFGTEDDVEACFIQLEDCGHLFESTSMDTYMGMDENQQATGIKLKECPKCR
TPIRRNLRYGAHVNRSLVEIEKVKEKINGTQSDIEAQKVVLKQQWTDKEDLLRYLPMEYI
QIRDTLRASDLTAKELWITENKMALLERLNKLLKIRRGHMSSVETFYFDEKVPEFLRWLM
DHHQKFSEQQASDLQSELQRLSFLAELNARCKMANGTGRRVHVQAEVTAMRKVLERMQPF
TQQDKDLVKQALKELDKKLPSTGLGITDEERMMIVKAINLSVGHWYKCPNNHIYAIGECG
RAMERSNCPECNATIGGASHALVSGNRVASEMDGAQEAV
NT seq
5340 nt
NT seq
+upstream
nt +downstream
nt
gggggagggagaggcagaggaggagtgagggggcgaggtagaggaagagggggagggaga
gaaatatctataggcggtggcacccctcaggttcatccaatggattacccaaccttggag
gagctgtcagggaaagaccctttagagctagccatcactctgtactctatgaaccatgaa
ctgcaagctctcctcgacgagagagagatgcgacaggaccttgttcagcttctctgccaa
gtattatgcaaggccttcttgtccaaaaccaaccaccaaaccgtacagtacttgactggc
ttaatcaaggattccggattcctccgaaccatcctgccccattacgtgatgggaatggga
tccgagtttgaccacactcgccgggaacaatacccccagcacttggacaacatcatgatc
cttctctccaaggtgctcagcgtcttcccagctagctctataaagggcgtgtccatgata
gttgccctcttcagaccagtcatcatcagcctgcgagccgtgggggtggacgtcctggag
cagacggaggagaacctggataggatccagggcctggtcgagcacctccaggagagagcc
agggagggcaccctgaggtctgacaactactccttcatcaccccccaggaagacgcccca
cccggggaggccgacttcaggaccctgccaatctaccccatccccaaagagttccaccag
gaccagagatcctacctcaggcccaacctcatctcccaacgctacgccagcggactgctc
tacctggacacgcacttccggctcatgcgagaggactttgtgaggcctcttcgagagggc
atccagcagctgattcagagccagcaggacctgggcaataaagacatccctttgagaaag
tgccgctttgatgacatcagagtgtactttgacactcgactggtggttccattgtgcacc
ccgtctggtttggcctataaggtccagtttgactcccatcctcttaagtttgtccgctgg
caaaactccaagcggctgatatacggctccctgctctgcatgtcctgtgacaactttgac
accttcctgtttgctactgtgtcggaccgggaccccaaggagctagagaagggctttgtc
cagctcagtttcttaggggagagcaggcgagccctggccggagtggaggcccaccaatcg
ttcctcatggtggagaccacagcctactttgaggcctaccgctacgtcctcgaagggctg
caggagctggaggtagaggatctgccctttcagaggtatatagtggaatgcagctcagac
gtcgaacctcctgcctacctgcccagggcagatacgtatgacttgtctgctattgcagtg
cctgagtttaagagcagtatcaagagcttccacaccctggatcctgaagcctggcccccc
atggagcagctgggattggacgagtctcagatgagagcccttcagctcgcactcaccaag
gagctggctatcatccagggacccccaggcacagggaagacctacacaggactaaagatc
gcccaggctctgcttaccaatcaggagatggggagaggtttcacctcgcccatgctggtg
gtttgttacaccaaccacgctctggaccagttcctagaaggcatccacaagtttttacca
gacggtattgtgagagtgggtgggcaaagcaacagtgaggtcctgaagcgtttcaccctg
agggagctgaaaagctcccattacttccgccgcaacctaccgcaacatcttcgccgtgca
aacagtaagatctatgatgcattgcggacagaagagactaagatccaaactcagtctgtg
cagctggagtgcagtcttcggggcgtcctaagggagcagtacctccaaaagttcatctca
gagaaacactgggatagcctgacgctacagccagcactggatggctttgagggctgtggt
gggaagaagccgtctcttgttatggagtggctgggattaggtttcactgccttccagcag
aggacgccacatcctcaaaattgcaatgcagatggggaaatggacgaagctgaagaggaa
gaggacgacctgatcgagatagcggaggaggcagacctgatccaggcggaacgctttgta
gaagcctcaaacatgcatcatggtcgggatgaagatcttagaaagacggaggagacagtc
agagatatggcggaactgatgctggccatgaacctggagaacactgagatacaggcagag
cagagtgaagaaggctgggagatgcagcgggtacagaagaggaagatgaaacatcgtatt
aggagggagctgggcaggagctcagccgtgagtgaggatgaggaggacaccattctggat
gtgtggactctcagtctgccagacagatggagactgtaccggttatgggtgaggcgttac
cggactgagctgcgtatgcgagcccagcaggcggagcaggactatcaggacacagccgag
cgtctggctgagattcgtttccttgaggacttatttgtcctgaagcatgccaaggtcatc
ggcatgacgactacgggggctgctagatgccgcaaagctttgcaggaagtgagtccccgc
ctggtgatcgtggaagaggcggcggaggtactggaggcccacaccatcaccactctgagc
aaggcttgccagcatctcatcctcattggagaccaccaacagctccggcccagtgcaaca
gtgtttgacctggccaagaacttcagtcttgaagtgtccatgtttgagaggctgatcaag
atggacattccgtatgtcagacttaactatcagcatcgtatgaggccagacattgcccgt
ctcctggtccctcacatctactctgagctggagaaccacccctcagtgatggactttgag
aatgttaaggggcttcactcaaacatgttctttgtggagcataattatcatgaagaggag
atcaaggatggaaaaagtcaccagaaccgccacgaggccctcttcgtggtggcactgtgt
cgctacctcctgttacaggactaccagccgttccagatcaccatcctcaccacttacaca
ggccaactccactgtctgcgcaacctcatgccagccaaagagttcaatggggtcaaagtt
catgttgttgacaaatatcaaggggaggagaatgatattgtcctgctgtccctggttcga
agtaacaaacaggggaagatgggtttcttgaacatccccaaccgtgtctgtgtagccctg
tcaagggctaagaagggcctctactgcattggaaacatggacatgttgggaaaggtcaag
ctttggagcaacatcctgcacacgctgcgagagaaagaccaagtgggccctgcaatgact
ttgtgctgccagaaccaccctgagcgacacattaaagtgtcctgcggagacgacttcaaa
caagctcccgagggaggctgcaacctgccctgcgagttccgcttgaactgtggtcacgcg
tgctccagtgcctgccacccgtacgaccaagagcacaaaaagtacacatgcaacaagaag
tgccagaaggtcctttgtgagctggggcatcgatgccaacgtcagtgctaccaggagtgc
cctactgactgccttaagcgggtagaaaagattgtgccacagtgccagcacaagcagatg
gtgccctgtcaccaggctccggagaagtttgtgtgccaggagccctgtcagcagaagctc
atgtgtgggcatccatgtgccttggtgtgtggggagtcctgcaccaccacctgcatggtg
atggtcacattggagctcaaatgtggacacaagcaagaagatccctgtcattataagaga
tctaccatacagccagaatgcaggacacattgcaaacagatgctgaagtgtggccacccc
tgtcctggttcctgccagaggtgccaccagggccgcttccacatgggctgtctccaccaa
tgtgatcgcctcctagtctgctcccataaatgtcgggagccctgtacacgtggatgccca
ccctgtcaaatgcgctgtgagaatcgctgcatccatagtgtctgtatgaagccatgcggc
cagctctgtgccccctgcatagagccttgtgcctggaagtgccctcatcagcgctgcagc
aagctttgccatgagccttgtgaccgtccaccatgcacccaaccctgtaccaaaaccttg
cactgtgggcacccatgcatcggcctgtgtggagacccctgccccaacaagtgtcgtgtt
tgccaccacgaggaggtaacagagatcttctttggtacggaggacgatgttgaggcctgt
ttcattcagctagaggactgcggacacttgtttgagtccacgtccatggacacatacatg
ggaatggatgagaaccagcaggctaccggaataaagttgaaggagtgccccaagtgtcgc
acacccatccgcaggaatctccggtacggggctcatgtcaaccggagtctggtggaaatt
gaaaaagtgaaggagaagattaatggaacacagtcagatattgaggcacagaaggtggtc
cttaagcagcaatggactgacaaggaggatttgctaaggtacctacctatggagtacata
cagatcagagatacactgagagcctccgacctcacagcaaaggaactatggatcactgag
aacaagatggccttacttgagagactgaacaagctgctgaagattcgtagagggcacatg
tcaagcgtagaaaccttttactttgacgagaaggttccggagttcctgaggtggctgatg
gatcatcaccaaaagttctcagagcagcaggcatctgatctgcagagcgagctacagagg
ctctcctttttggcagagcttaacgcccgctgcaagatggctaatggaacaggccgtcgg
gtccacgttcaggctgaggtcacagccatgaggaaggttctggagagaatgcagccattc
actcagcaagacaaggacttggtaaagcaggcacttaaagaactggataaaaagctacca
agcactggcctggggatcactgatgaagaaaggatgatgattgttaaagctatcaacctg
agtgttggacactggtacaagtgtcccaacaatcacatctacgccatcggagaatgtgga
cgggccatggagcgtagcaactgcccagaatgcaacgctacgattggtggagcaagccat
gctctggtcagtggcaacagagtggcatcagagatggatggggcgcaagaggctgtgtga
DBGET
integrated database retrieval system
