Salvelinus namaycush (lake trout): 120064493
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Entry
120064493 CDS
T07522
Name
(RefSeq) collagen alpha-1(XVIII) chain-like isoform X1
KO
K06823
collagen type XVIII alpha
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
snh04147
]
120064493
00535 Proteoglycans [BR:
snh00535
]
120064493
00536 Glycosaminoglycan binding proteins [BR:
snh00536
]
120064493
Exosome [BR:
snh04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120064493
Proteoglycans [BR:
snh00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
120064493
Glycosaminoglycan binding proteins [BR:
snh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120064493
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Fz
DUF1554
Motif
Other DBs
NCBI-GeneID:
120064493
NCBI-ProteinID:
XP_038871038
UniProt:
A0A8U1H555
LinkDB
All DBs
Position
Sna19:complement(50157037..50351788)
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AA seq
1616 aa
AA seq
DB search
MWDSQEGTVLPTDLIGLAENVNVLAGKENEMLGITQVDLAESVLDEHNRTAEWNATVFPI
DSQPVPSVNISLETTPSSSSSNRVINSSSSWNANNFNSTEYSDEYTVSGDFLTPFDSNRS
LLATSETPAPESPRCFPIDFHLPFCKSMGGDSFVLPNYFNHSSVKEVRAVLGSWAWLLRS
RCHHSLEWFFCLLLVPSCPRGLPLLWPCRSFCEVLQDSCWTVLDEGSLNMECHSLPDEDD
GYQCLSVGNQKDEIGVSLLHLIGDPPPDEITKIYGPDNSPGYVFGPDANTGQLARAHLPS
PFYRDFSLLFNLKPQSTKGGVIFSVTDASQKIMYVGVKLSPVKASKQNVIFYYTEPDSQV
SYVAATFPVHSLADQWNRFSISVLDDKVTFYINCDDQPQVVRFERSPDEMELEAGAGVFV
GQAGGADPDKFLGVIGELRVVGNPRAAERQCEEEGDDSDVASGDGGSGDVEGKLDVKKKG
PGTFKWDAEVQKHVWVEDDRPTVTTTPPSSRPIQQPPVTRQQPEVSPKKETGPGGSRGEK
GDRGEKGDRGPFGPKGDSGSESGTRGGARGEKGVPGEKGLKGKAGFGYPGSKGDPGPAGP
PGPPGSPGSPGSAAEVVSRGDSSGIPTVAGPRGPAGTPGPAGPEGPAGAAGEPGDPGEDG
SQGLVGPPGFPGTPGDSGLKGEKGDRGEGQPGPSGPPGPPGLPAPSSHDRPTFVDMEGSG
FPDLETLRGLPGLPGPPGLPGAPGPAVVGTGLSSSFGPRGPPGQDGAPGQPGLPGPPGTD
GRPAVAGARGEKGDPGELGLPGAVGAKGAQGLTGIPGQPGQGGLAGLPGPMGPVGQPGPP
GPPGPSYHAGFDDMEGSGVGVANGVPGARGPDGRQGTTGIPGLPGKPGFPGAAGEKGSEG
LQGRDGRPGLDGFPGPNGLKGDRGERGETGRDGNGQPGPPGPPGPPGQIIYQTSSSYDGV
VGGAGPQGGTGLPGQAGFPGPIGSKGDMGDPGQPGYGVKGEKGEPGLIIGPDGSPLYLGE
LSGEKGDRGPAGPVGPPGQYGPSGIKGEFGMPGRPGRPGVNGYKGEKGEPTTGAGFGYPG
VPGPPGPPGSPGPAVPVDRFNGYDASRNYPATKGEKGDHGAQGLPGTPGVASNLDIFTFK
NDLKGERGDSGMKGEKGEPSGGYYDPRFRGQQGPPGPPGNPGLMGPKGDSIMGLPGPQGP
PGSPGIGYDGRPGIPGPSGPPGPPGSSSLPGAYRPNHSINIPGPPGPAGPPGTPGHTSGV
TVLRSYDTMIATARRQSEGTLIYIVDKTDLYIRVRDGFKQVLLGDYSPFYRDLDNEVAAV
QPPSVVNYPQSQDHSANNGAEHFSQGGTATHPIKPPPRKPAEIPRPAKPDNRNPDPRYPP
QYDPRYPPQPDARYPPQTDGRYSHVQPENRYPTRPESRFPVTPQRRPVPQPAGHLHTSGP
GLHLIALNMPQVGNMRGIRGSDFLCFQQARAVGLKGTFRAFLSSKLQDLYSIVRKSDRDS
LPIINLKDQVLFNSWESMFSKTGGRMKENAPIYSFDGRDILRDSAWPEKMVWHGSSNEGH
RQTDNYCETWRAGDRAVTGLASSLQSGQLLQQLPSSCSSSYIVLCIENSSLSHSKK
NT seq
4851 nt
NT seq
+upstream
nt +downstream
nt
atgtgggatagccaggagggaacagttttacccacagacctcatcggtttagcagagaat
gtcaatgtgcttgcagggaaagagaatgagatgctgggtattacccaggtggacctagca
gaaagtgttttggatgagcacaacagaacagctgagtggaatgctacggttttccccata
gacagtcagcctgtcccaagtgttaatatctctcttgagacaactcccagtagcagcagt
agcaatagagtaattaacagtagctctagttggaacgccaataattttaactcgacagag
tattctgatgaatacactgtctcaggtgattttctaaccccttttgacagcaaccgttct
ctcttagctacgagtgagacgccggccccggaatccccacgttgctttccaatagatttc
catttgcctttctgcaaatccatgggtggcgacagctttgtgttgcccaactatttcaat
cacagcagcgtgaaggaggtccgggctgttttgggctcttgggcgtggctcttgaggtcc
cgctgccaccatagcctggagtggtttttctgcctgctgctggtgcccagttgcccccgg
ggactgccactgctttggccttgccgtagcttctgcgaggtcctgcaggacagctgctgg
acagtccttgacgagggcagcctcaatatggagtgccactctttgcctgatgaggacgat
gggtatcagtgcttgtcagttggtaaccagaaagatgagatcggtgtctccctcctgcac
ctgatcggggaccctcccccagacgagatcaccaagatctatggtcccgacaacagcccc
ggctacgtcttcggccccgacgccaacacgggccagttggcacgtgcccatcttcccagc
cccttctaccgggacttctccctcctcttcaacctgaagccccagtccaccaagggcgga
gtcatcttttctgtcacagacgcctcgcagaagattatgtatgtgggcgtcaagctgtcg
ccggtcaaggcgagcaagcagaatgtcatcttctactacacggagcccgactcacaggtg
tcgtacgtggcggccaccttccccgtccacagcctggccgaccagtggaaccgcttctcc
atctccgtgctggatgacaaggtcaccttctacatcaactgcgacgaccaaccccaggtg
gtacgcttcgagaggtccccggatgagatggagctggaggccggagccggggtgttcgtg
ggccaagccggaggggccgatcctgataagttcctgggggtgattggggagctgagggtt
gttggaaacccccgggctgctgaaagacagtgtgaggaggaaggggacgactcggatgtg
gcttcaggagatggcggaagtggcgatgtggaagggaaactggacgtgaagaagaaaggc
ccgggtactttcaaatgggacgcggaggtacaaaaacatgtgtgggttgaggacgacaga
ccgacagttacgactacccctccatcgtcacgcccgattcagcagcccccggtgacccgg
caacaaccagaggtgtctcccaagaaagagactggcccaggtggatctagaggagagaag
ggcgacagaggagagaaaggagacaggggtcctttcggtccaaagggagattctgggtct
gagtcgggcacacgaggaggggcacgtggagagaagggagtgcctggagaaaagggactg
aagggaaaagcaggcttcggataccctgggtcgaagggcgaccccggccccgctggtccc
cctggaccaccaggctccccggggtccccggggtccgcggctgaggtggtatcacgtggc
gacagctccgggattccgacggttgcgggtcccagaggaccagctggaactccgggacct
gcaggccctgagggacccgcaggagccgccggagagcctggtgatcctggtgaagatgga
tctcaaggcctcgttggaccgccaggcttccctggaaccccaggagactctgggctcaaa
ggagagaagggtgaccgtggtgagggccagccgggccccagtggacctcccggaccccca
ggactcccagcgccatccagtcatgaccggccgacctttgtggacatggaaggctctggg
ttccctgacttggagactcttcggggactgcctggtttgcccggcccgcctggactcccc
ggggccccaggtcctgccgttgttggcacagggctctctagctcgtttggcccccgaggt
cccccaggacaagatggtgcccctggtcaaccggggttacccggcccacctggtactgat
ggtcgcccagcagttgcaggggccaggggagagaagggtgacccaggtgaactcggtctt
ccgggagcagtcggcgcaaagggtgcacagggattgactggcatccctggtcagccagga
cagggcggattggctggccttcctggaccaatgggaccagtgggacaacccgggccacca
ggaccccccggaccaagctatcacgctggctttgatgacatggaaggctctggtgtggga
gtggccaatggggttcctggagcccgagggccagacgggcgacagggtactactggcatc
cctggcctaccgggaaagcctggtttccctggtgctgctggcgagaagggaagtgaagga
ctacaaggaagagatggccgaccagggttggacggtttccctggacctaatggactaaag
ggggacagaggagaaagaggcgaaactggtcgtgatggaaacggacagcctggaccacca
ggcccacccggcccacctggacaaataatctaccagacctccagcagctatgatggtgtc
gttggaggagctgggccccagggtggaactggtctacctggccaagctggattccctggt
cctattggatcaaagggtgacatgggagacccaggccagcccggttatggagtcaagggc
gagaagggcgagcctggattaatcatcgggcctgatgggagtcctttgtacctgggagaa
ttgtcgggtgagaagggagacagaggacctgctggacccgttgggcctcctgggcagtat
ggaccttctgggataaagggtgaatttggaatgcccggaagacctggtcgtcctggtgta
aacggatacaagggggaaaaaggagagccaaccacaggtgccggatttggctacccaggt
gtcccaggcccacccgggcccccaggatcacccggaccagctgtgcctgtggaccgcttc
aacggatatgacgcctcaaggaattatccagcgacaaagggggagaaaggtgatcatgga
gctcaaggtctcccaggaacgccaggtgtggcctctaacttagacatattcacattcaag
aatgacctgaaaggagagcgtggggattctggcatgaagggggagaagggagagccaagt
ggtggctattatgacccccgttttagaggacaacaaggcccaccaggaccccctggaaac
ccaggacttatgggtccaaagggagattcaatcatgggcctccctggtccccagggccca
ccaggctccccagggatcggctacgatggtcgtccaggaatcccaggcccatcaggtcct
cccgggcccccagggtcctcctcactaccaggggcctatagacctaaccactccatcaat
attcctggcccccccggacctgctggaccacctggaactcctggtcacacttcaggggtg
acagttttgaggtcatacgacaccatgattgctactgcaagacgccagtcggagggcacc
ctcatctacattgtcgacaaaacagatctctacatccgagtccgcgatggattcaaacaa
gtcctgctcggtgactacagtcccttctacagagatctggacaacgaagtagcggcagtc
cagcctccctctgtcgtcaactacccccagtcccaggatcactcggccaacaatggagct
gaacacttctcccaaggcggtaccgccacccaccccatcaagccccctcctcgcaagcct
gcggagatccccaggcctgccaaacccgacaaccgcaaccccgaccccagatatccccct
cagtacgaccccagatatccccctcagcctgacgctaggtacccccctcagacagatggc
cgctacagccatgtgcagcctgagaacaggtatcccacccggcccgaaagccgattccca
gtcaccccccagcgaagacctgttccccagcctgccggtcacttgcacacatcagggcca
ggactccacctgatcgccctgaacatgccccaagtgggcaacatgcggggcattcgtggg
tcagacttcctgtgtttccagcaggcccgtgctgtgggcctgaagggaacattcagggct
ttcttgtcctccaagctccaggacctctacagcattgttcgcaagtccgacagagacagc
ctccccatcataaacctgaaggaccaagtgctgtttaatagctgggagtctatgttcagt
aagactgggggcaggatgaaggaaaatgcaccaatctactcctttgatggccgagatatc
cttagggacagtgcatggcctgagaaaatggtctggcacggctctagcaacgagggtcac
cgccagactgacaactactgcgagacatggagggcaggagaccgcgcagtgacaggcctc
gcgtcctcactgcagtccggccagctcctacaacagttgcccagcagttgctctagctcc
tacatagtgttgtgtatcgagaacagttctctctcacactccaaaaaataa
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