Salvelinus namaycush (lake trout): 120064677 Help Entry 120064677         CDS       T07522                                  Name (RefSeq) collagen alpha-1(II) chain   KO K19719   collagen type II alpha Organism snh  Salvelinus namaycush (lake trout) Pathway snh04510   Focal adhesion snh04512   ECM-receptor interaction Brite KEGG Orthology (KO) [BR:snh00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     120064677  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     120064677  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:snh00536]     120064677 Glycosaminoglycan binding proteins [BR:snh00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    120064677 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI VWC Motif Other DBs NCBI-GeneID:  120064677 NCBI-ProteinID:  XP_038871227 UniProt:  A0A8U1F7B3 LinkDB All DBs Position Sna20:56615098..56682531 Genome browser AA seq 1490 aa AA seqDB search MFSFVDSRTVLLLVATQVVLLAVVKCQEEDQDLGSCMQDGQRYSDKDVWKPEPCRICVCD TGTVLCDEIICEEIKDCPKPEIPFGECCPICVRDGEAPPSGAPGAKGQKGEPGDITDVVG PRGPGGPMGPSGEQGPRGDRGDKGDKGSPGPRGRDGEPGTPGNPGPPGPSGPNGPPGLGG NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEAGEPGSAG PLGPRGPPGPSGKPGDDGDAGKPGKGGDRGPSGPQGARGFPGTPGLPGIKGHRGYPGLDG LKGEGGAAGSKGESGAPGENGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPG PVGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGSRGESGTPGSPGPAGASGNPGTDGIGG AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPAG PQGALGPAGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGVGG VSGPKGAGGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPGGSSGEDGRPGPPGPMGARG QPGVMGFPGPKGANGEPGKGGEKGLLGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG QPGPSGFQGLPGPPGPPGEGGKPGDMGVPGEGGAAGATGPRGERGFPGERGGAGPQGLQG PRGLPGTPGTDGPKGAIGPGGASGAQGPPGLQGMPGERGASGIPGPKGDRGDNGEKGPEG ASGKDGSRGLTGPIGPPGPAGPNGEKGESGPSGPSGAAGARGAPGDRGETGPPGPAGFAG PPGSDGQPGVKGEQGEGGQKGDAGAPGPQGPSGAPGPSGPTGVSGPKGARGAQGPSGATG FPGAAGRVGPPGPNGNPGAAGPSGPAGKDGPKGVRGDGGPSGRQGDAGLRGAAGSPGEKG DAGEDGPSGPDGPSGPSGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGSPGGSGDRG PPGPVGPPGLTGPAGEPGREGNAGSDGPPGRDGATGIKGDRGNTGPAGAPGASGANGAPG PVGPTGKQGDRGEAGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGEGGERGQKGHRGFTG LQGLPGPPGQAGDQGASGPAGPSGSRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGETG PSGPPGNSGPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADQASGNLRTHDAEVDA TLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWTSGEYWIDPNQGCTIDAIKVYCNM ETGESCVYPKPASIPKKNWWSSKSKAAKHVWFGETMNGGFHFSYGDDSLAANTASIQMTF LRLLSTEASQNLTYHCKNSVAYMDGATGNLKKAVLLQGSNDVEIRAEGNSRFTYTVMQDG CTKHTGAWGKTVIDYRSQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL NT seq 4473 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggattcgaggactgtactgctacttgtagcaacccaagtcgttcta ttagccgttgtcaaatgtcaggaagaagaccaggacctaggcagctgtatgcaggacgga cagcgctatagtgacaaggacgtatggaaaccagagccgtgtcgtatttgtgtgtgcgac acgggaactgtcctgtgtgacgaaataatctgcgaggagattaaagactgccccaaaccc gagatcccattcggagagtgttgccccatctgcgtgcgggacggggaagctcccccaagt ggggccccgggagctaagggtcagaagggggaaccaggagatatcacagatgtcgtagga ccaagaggacctggaggccctatgggcccctcaggagagcagggaccacgcggagacaga ggagacaaaggcgataagggcagtcccgggccccgtggcagagatggcgagcctggtacc cctggtaaccccggcccccccggaccctcaggacctaacggacctcccggccttggagga aactttgctgctcagatggctggaggatttgacgagaaggctggcggagcacagatgggc gtgatgcaaggaccaatgggccctatgggtcctcgagggccacctggcccctctggagct cctggcccacaaggtttccaaggcaaccccggagaggctggagagcccggatcagctggc ccgttgggtccccgtggtccacctggaccctctggtaaaccgggagatgacggtgacgct ggcaaacccggcaaaggtggtgatcgtggaccttctggtcctcagggagctcgtggattc ccaggaactcccggtctgcctggaatcaaagggcatagaggttatccaggtcttgatgga ctcaagggagagggtggagctgctggttctaagggagagtctggtgcgcccggtgagaat ggcgctcccggacccatgggaccacgtggtctgcccggtgagagaggtcgccccggtccc tctggagctgctggtgctcgtggtaatgacggtctgcccggccctgctggtcctcctggc ccagttggtccatctggtgctccaggcttccccggctctccaggttctaagggagaagct ggccccaccggtgctcgtggacctgagggcgcccagggatcacgtggagagtcaggaacc cccggatctcccggacccgccggcgcttctggtaaccctggaactgatggtattggtgga gctaaaggatcagctggtgctcctggtatcgctggtgcgcctggcttccccggaccccgt ggccctccaggaccccagggagccactgggcctctcggaccaaagggaacatctggtgac cccggtatcccaggtttcaagggtgaggctggacccaaaggagagattggacccgcgggt ccccaaggagcccttggccctgcaggagaggaggggaagaggggacccagaggagagccc ggcgcagctggacctctcggacctcccggagagagaggcgcccccggtaaccgtggtttc ccaggtcaggatggtctggctggtcccaagggagcccctggcgagcgtggagtcggaggc gtgtctggccctaagggagccggcggtgaccctggtcgccctggcgagcccggtcttcct ggtgcaagaggtcttactggtcgtcccggtgatgcaggtcctcaaggaaaagttggaccc ggtggttcttctggtgaggacggtcgccccggacctcctggccctatgggagcccgcggt cagcctggcgtgatgggattccccggacccaagggagccaacggcgaacctggcaagggc ggagagaaaggattgctcggtgcgccaggtctgagaggtcttcctggtaaggatggtgag accggagctgctggaccccctggccctgctggccctgctggagagagaggagagcaagga caacctggaccttctggcttccagggtctgcccggacctcccggcccccctggtgagggt ggcaagcccggtgacatgggagttccaggagagggtggagctgctggtgccactggacca agaggtgagcgtggtttcccaggagagagaggaggtgctgggcctcaggggctgcaggga ccccgtggtcttcctggaactcctggaactgacggacctaagggcgcaatcggaccaggt ggtgcatcgggtgcccagggaccccccggtctgcaaggtatgcccggagagagaggagcc tcaggcatccccggacctaagggagacagaggtgacaacggagagaagggacctgagggt gcttctggcaaagacggttcaagaggtttgactggtccaattggtcctcctggcccagct ggtcccaatggagagaagggtgaatctggtccctctggaccttccggtgctgctggtgcc cgaggtgctcctggtgacaggggtgagactggacctcccgggcctgctggcttcgctggg cctcctggatctgatggtcagcccggagtcaagggagagcagggagagggtggacagaag ggagacgctggtgcacctggaccacagggaccctccggagctcctggaccttccggacct actggcgtttctggacctaaaggtgctcgcggtgctcagggaccctctggtgccactggt ttccctggagctgccggcagagtcgggccccctggtcccaatggtaaccctggtgctgct ggtccctctggccctgctggtaaagatggtcctaagggtgtgcgtggagacggtggaccc tcaggcagacagggagatgctgggctgcgtggagccgctggatcccctggagagaaggga gatgctggagaggatggtccctctggtcccgatggtccttcaggtccttcaggtctggct ggacagcgtggtattgttggtcttccaggacagcgtggagagagaggtttccctggcctg ccaggaccctctggtgagcctggtaaacaaggatctcctggtggaagcggagaccgtggg ccccctggccctgtggggccccctggactgactggacccgctggagagcctggtagagag ggcaacgctggttctgatggaccccctggtagagatggagccactggaatcaagggtgac cgtggtaacaccggtcctgctggtgctcctggcgcctcaggagctaatggtgcccccggc cctgtcggccccaccggcaagcagggagacaggggagaggctggagctcaaggaccagct ggacctgccgggcctgctggagccagaggaatggctggaccccaaggaccccgtggagac aagggtgaggctggagagggtggtgagagaggacagaagggacacagaggattcactggt ctgcagggtctgcccggacctcccggtcaagctggagaccagggtgcatctggacctgcc ggaccaagtggatcaagaggaccccccggaccagttggtccctctggaaaggatggatcc aacggtatgcccggccccatcggacctcccggaccccgtggtcgctctggagagactggt ccctctggtccccctggaaactccggaccccctggtcctcctggtcctcccggccctggt atcgacatgtctgccttcgctggcctgtctcagcctgagaaatcccccgatcccctgagg tacatgagggccgaccaggcctccggaaacctgaggacgcacgacgccgaggtggacgcc acgctcaagtctctcaacaaccagatcgaaaacatccgctcccccgagggctccaagaag aaccctgcacgtacttgcagagacctgaagctgtgccaccccgactggacgagcggagag tactggatcgaccctaaccagggctgcaccatagatgccatcaaggtctactgtaacatg gagactggagagtcctgcgtctaccccaagcccgccagcatccccaagaagaactggtgg tccagcaagagcaaggctgccaaacacgtctggttcggggagaccatgaacggaggattc cacttcagctatggtgatgacagcctggctgccaacacggccagcatccagatgaccttc ctgcggctgctatccaccgaggctagccagaacctcacctaccactgcaagaacagtgtg gcttacatggacggggccacgggcaacctgaagaaggccgtgctgctccagggctccaac gatgtggagatcagggccgagggaaacagccgcttcacgtacaccgtcatgcaggacggc tgcacgaaacacacaggagcatggggcaagacagtgattgactacagatcccagaagacc agccggctgcccatcgtggacattgctcccatggatattggaggagcggaccaagagttt ggagtcgacgtcggtgcagtctgcttcttgtaa

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