Salvelinus namaycush (lake trout): 120064882
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Entry
120064882 CDS
T07522
Name
(RefSeq) integrin alpha-7-like
KO
K06583
integrin alpha 7
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04510
Focal adhesion
snh04512
ECM-receptor interaction
snh04810
Regulation of actin cytoskeleton
snh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120064882
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120064882
09142 Cell motility
04820 Cytoskeleton in muscle cells
120064882
04810 Regulation of actin cytoskeleton
120064882
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
snh04147
]
120064882
04515 Cell adhesion molecules [BR:
snh04515
]
120064882
Exosome [BR:
snh04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
120064882
Cell adhesion molecules [BR:
snh04515
]
Integrins
Integrin alpha subunits
120064882
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Integrin_A_Ig_3
Integrin_A_Ig_1
Integrin_A_Ig_2
FG-GAP
FG-GAP_3
DUF7507
Motif
Other DBs
NCBI-GeneID:
120064882
NCBI-ProteinID:
XP_038871402
UniProt:
A0A8U1F7W1
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Position
Sna20:56186960..56290062
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AA seq
1200 aa
AA seq
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MDNSERDNSEMDNSERDNSERGNSERDHSERGNSERDNSESGNSERDNSERDNSERDNSE
RDNSAQKLSTPAGFNLDTSMTLTKEGETGSFFGFSLALHQQLTPEPHSWILVGAPRARGL
GMMQRKRPGALYRCPITSEEFDCERVDIDGDVNLDWESKDNQWLGVTVKSQGIGGKVVAC
AHLYELRQRAGLPSETRDPIGRCYVLSEDLTERDDLDGGEWKFCEGRPQGHEQFGFCQQG
LSAAFTPDNQFIMFGAPGTYNWKGEMRVQLLNQTLLDLGFYDDGPYEVADEKQLNAQLIP
VPYHSYLGLLFMASPDEDALVYKTLEPHSNRPMFEDVAQNSYLGFSVDSAKGIMSRGELT
FVAGAPRANHTGAVVLLRKDNMYRLVPQHILWGEELASSFGYSVATADLNSDGWTDLIVG
APNYFDRKAEIGGAVYIFLNPFGNWEYARPIRLNGTHDSMFGLTVNNVGDLDRDGYDDIA
VGAPFDGDGKVFIYRGLSSGIDTKPAQILDGVDEGVKRFGYSISGGLDIDGNLYPDLAVG
SLGDKLVLYRSRPVIHVTRDVSIEPQQYIDLEQHNCKGRDGVCVEVKACFTYTAYPETYS
PDITLVLLIEADTERRKLGLPHRVSFLGRSAQAAEYTHTDEVELKGQRHPACQSATFQLH
ENIRDKLRPISLAITHTIRPPMFSSDTNPEERDTLPPVLSVSTSNTLHSEVNFLREGCGD
DKICQSNLKLTYQFGTRPPTSDLFTPLPRDDEEVAVFSLSDQRSVVLEVTVTNMPSDSLY
PEKDGDDAHAAQLVVTLPDTLSYSGFRGQQVVCQANQNGSQAECELGNPLKRDAILKFYI
ILSTSAITIETTELTVNLLLATISEQRDLAPVTAVAKIIIELPLAVSVLARPHQLFFSGA
VKGESAMETLDDVGSAVEFEFTVTNTGPSLQTLGSAFLNIMWPHELSNGKWLLYPTALHF
HGHPETHCTPHTSLNPRKFSHSSPSDDQPQAAGLKARRKGRSNPEEEGHVMTKGSLGRTT
PAVAASERRKSLKLDCLLGSARCVLFQCPLHSFSDSAVLKIQGRLWNSTFLEEFPSVSAL
ELLVRANITVKSSIKHLVLRDAAAQVPVMIYPEVGLTAQYWIPWWWILIAILAGILVLSL
LVCILWKCGFFRRVQYEDKVPQYHAVKIPRQDRPQFQQSQQKAGILQKKEWATHWSDGSS
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atggataactcagagagggataactcagagatggataactcagagagggataactcagag
aggggtaactcagagagggatcactcagagaggggtaactcagagagggataactcagag
agtggtaactcagagagggataactcagagagggataactcagagagggataactcagag
agggataactcagcccaaaagctgtctactccagcaggattcaacctggatactagcatg
actctgaccaaggagggggagaccggcagcttttttggattctcattagcgcttcaccag
caactcacaccagaaccacacagttggatcctggtgggggcgccacgggccagaggactg
ggcatgatgcagaggaagcgccctggcgctctgtaccgctgtccaatcacaagcgaggag
tttgactgcgagcgcgtggacatcgatggagacgtaaacctcgactgggaaagcaaggac
aaccagtggctaggagtaacagtcaagagccaggggattggaggaaaggtggtggcgtgt
gcccatctgtacgagctgcgtcagcgcgcgggcctgccatcggagacgcgggaccccatc
gggcgttgctacgtgctcagtgaggacctgaccgagagggatgacctagacggaggagag
tggaagttctgtgaggggcgaccccagggacacgaacagtttggcttctgtcagcagggt
ctgtctgccgccttcacacccgacaaccaatttatcatgttcggagctcctggaacgtac
aactggaaaggagagatgcgtgtccagctactaaaccagactttactggatctgggtttc
tatgacgacgggccctatgaagtggcggatgagaaacagctgaatgctcagctgatccct
gtaccctaccatagttacctggggctcttgttcatggctagtcccgatgaagatgcgctg
gtgtacaaaactctggagccacactccaaccggcccatgtttgaggacgtagctcagaat
agctacttaggcttctcagtggactctgctaaaggcataatgagtcgtggtgagctgacc
ttcgtggcgggggctccgagagccaatcacacgggagcggtggtgctgttgcgtaaagat
aacatgtaccgcctggtgccacagcacatcctgtggggagaggagctggcttcttccttt
gggtactctgtggctacggctgatctcaacagtgacggctggacagacctgatagtggga
gctcctaactactttgaccgaaaagcagagatcggaggtgctgtgtacatcttcctcaac
ccattcggtaactgggagtacgctcggccaatcaggctcaacggaactcatgactccatg
tttggactgaccgtcaacaatgtgggagacttggacagggacggatatgacgacatcgct
gtgggggctccattcgatggagatggcaaagtgttcatctaccgaggcttgtcctcaggc
atcgacaccaagcctgcacagatcctggatggagtggacgagggggtgaagaggttcggc
tactccatctcaggcggcctggacatcgatgggaacctgtaccctgacctggcagtaggc
tctctcggtgataagctggttctgtacaggtctcgcccggtcattcacgtgacccgggac
gtgtccatcgaacctcaacagtatattgacttggagcaacacaactgtaaggggagagat
ggagtgtgtgtggaggtcaaagcctgcttcacctatactgcttatccagagacctactca
ccagacatcaccctggtcctactcatcgaggctgacaccgagcgcaggaagctcggcctg
ccccaccgtgttagcttcctgggtcgcagtgcacaggcggcggagtacacacacactgac
gaggtggagctgaaaggtcaacgccatcccgcctgccagagcgccaccttccaactacac
gagaatatccgcgataagctgcgtcccatctctctggccatcacccacaccatcagaccc
cccatgttctcttcagacactaacccagaggaacgagacacgctacctcctgtactgagt
gtttccacctccaacaccctgcactctgaggtgaatttcctgagggaaggatgtggcgat
gataagatctgtcagagcaacctgaagttgacctaccagtttggaacccgacctcccacc
tctgacctcttcacccctctgccaagggatgatgaagaggtggcggtgttttctctgtct
gaccagaggtctgtggtgttggaggtgaccgtcaccaacatgccctctgactctctgtac
cctgagaaggacggtgacgatgcccatgctgcccagctagtggtcaccctgccagacacc
ctgtcctactctggcttcaggggacaacaggtggtgtgccaggccaatcagaacggctct
caggcagagtgcgagctgggaaaccctctgaagagagatgctatactgaaattctacatc
atcctcagcacgtctgctatcaccatagagaccacggaactcactgtcaacctcctgctg
gctactatcagtgaacagcgagacctggccccagtcacagccgtggctaaaatcatcatt
gagctccccctggctgtcagtgtgctggccagaccacaccagctgttcttcagtggggct
gtgaagggggagagtgccatggagaccctggacgatgtgggcagtgctgtggagtttgag
tttacggtgaccaacaccgggccgtccctgcagactctaggctccgccttcctcaacatc
atgtggcctcacgagctgtccaatgggaagtggctcctgtaccccactgctctccacttc
catggccatccagaaacacactgtaccccccacacctccctcaacccacgcaagttctcc
cacagttctccttctgacgaccagccacaggcagcaggcctgaaggccaggaggaagggg
cgttccaacccagaagaggagggccatgtgatgaccaagggcagtctgggtaggactacg
cctgctgtggctgcctcagagagacgcaagtcactcaaactggactgtctgctgggttca
gcgcgatgtgtgctgttccagtgtcctctccacagcttctctgactctgctgtcctcaag
atccagggacgcctttggaacagcacctttctggaggagttcccatcagtcagtgctctg
gagctgctggttagagccaacatcacagtcaagtccagcatcaaacacttggtgctgagg
gatgctgctgcacaggtcccagtgatgatttacccagaggttggtctgactgcccagtac
tggatcccctggtggtggattctcatagccatcctggctggtatcctggtgctgtctctg
ctggtctgcatcctctggaagtgtggtttcttccgtcgggtccagtatgaagacaaagtg
cctcagtaccatgcggtgaagatcccccgtcaagaccggccccagttccagcagagccag
cagaaggcagggatcctccagaagaaggagtgggccacacactggagcgacggaagctcc
tga
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